Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq7036 343 2e-89 seq1088 170 2e-37 seq6250 93.3 5e-14 seq7637 84.2 3e-11 >seq7036 Length=213198 Score = 343 bits (380), Expect = 2e-89 Identities = 665/981 (68%), Gaps = 3/981 (0%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||||||||| |||||||| |||| ||| || ||| ||||| ||| || ||||| || Sbjct 123406 CAGATGTTCATCCAGACACTGGATGGCAAAGTGGTCGACGTCCATGTCAAACTTATTGGC 123347 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| | | | || ||||||| || |||||||| || || | ||| || Sbjct 123346 AAACAAGTGGTGTG---TACGCAGCATCCAGTTCAAGTCTCCGGCTCCAAAAATGCACAC 123290 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| | ||| ||||| || ||||| |||| || || | || ||||| || Sbjct 123289 CGAGCGCACGTGGATGCCATTGCAGGGTGGGTAGGGAGCACCCTTAGAAACATCACCCTC 123230 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||||||| ||||||||||| | || ||||||||| || |||||| || | Sbjct 123229 ATAGTACTGCCACTTGACAAACCTGGCAACCGACTGCATGTCAGACAAGTCGTACTTATG 123170 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| || | | || || || | || || | || | |||||||| || | || Sbjct 123169 GCTCAAGGAGAGTGAGCCCGGGACTTCAGGGATCCTTTGGATAGTGGCCCAGAGATACTC 123110 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||||| | ||| ||||| |||| | |||| ||| || Sbjct 123109 ATCTGGGCTGTATGTGTCCTGCGCCCACTCCATAAACTTTTGGATTTTTTCATCCTCTAG 123050 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || ||| | || ||||| || || ||||| || || | ||| | Sbjct 123049 CACATACCCCACATACTCCCTGCTGACCACAAAATAGGCACTGCCTGAAAAAAGAGGTGT 122990 Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531 | || || ||||| | || ||||| || | ||| || || | | | Sbjct 122989 TTCCAGTGGAGGACGCACTTTGACAGTCCCCGTGTTGACCAGCTTTCCATTAACAACCAC 122930 Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 || |||| |||||||| | || || ||||| || || || || ||||| Sbjct 122929 ATGCTGCTTTTTCCACCTTTCTTCTTTATGGAAGGGCATCTTCTCGGTTTCAAGGCTGTT 122870 Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651 |||| || || || |||| | |||| || |||||||| || || | ||||| || Sbjct 122869 TTCACCCATGAAGGACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAGGAAAATC 122810 Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCAT 160711 ||||||| | ||||| | ||||||||| || |||| || ||||||| ||| Sbjct 122809 CATACCGCAAAGATTTATTAAGTACTTCCAGCGTGCACTCATTCTGTAGAGGTCCCCCAT 122750 Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771 ||| || | || ||||| || || ||||| || || || || || |||| | | ||| Sbjct 122749 GCAGTTGAGGTCGGCCTGAACCCGACTCCACGATGCATAAACCACACTCTCCAACTGACT 122690 Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTT 160831 ||||||||||||||| |||||| ||| | || ||| ||| || ||||| || Sbjct 122689 GGCCACAAAGACGTTCCTGAAACAGGACGCAATGCCCGTCACTGCAGCTAAGAAGGACTC 122630 Query 160832 ATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAG 160891 || | |||| ||||||||| | |||||| | ||||||||| ||||||||||| || Sbjct 122629 TTCTGATTTTCTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGATGGCCCTCAG 122570 Query 160892 CAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951 || ||| || | ||| || || || ||||| | ||| ||||| || ||||| |||||||| Sbjct 122569 CAGCCTGTCCAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGAAACTC 122510 Query 160952 GGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCACA 161011 | || || ||| |||| | | | || || ||| ||||||| ||| | ||| Sbjct 122509 TGCTTCTTCTTTACTAAGGGGTTCCATGATATATTTGCGCCTCTTGATGAAAGACGTACA 122450 Query 161012 ATCCCGCGTCATGTTGATATA 161032 |||| |||||||| || || Sbjct 122449 GTCCCTGGTCATGTTTATGTA 122429 >seq1088 Length=453931 Score = 170 bits (188), Expect = 2e-37 Identities = 231/321 (72%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 168151 ATAGA--GTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCA 168208 ||||| || | ||| | | | || || ||||| || || || || | ||| |||| || Sbjct 35745 ATAGATGGTGAGGCAGGCTGTCCCTGAGATCTTCCCAGAACCAAAGATATTGTAGAGACA 35686 Query 168209 CATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAG 168268 |||| | || ||||| ||||||| |||||||||||| || || | |||||||| |||| Sbjct 35685 CATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATAGTTGAGTTCTGGAG 35626 Query 168269 GCCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTT 168328 |||| || || ||||||| | || ||||| | ||| || ||||||||||| ||| Sbjct 35625 TCCCAGCTCGGTGATGTTCATCCTGTCCTTATAGGCAGGCTGGACTACAACGCCATGGAG 35566 Query 168329 CTCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTAT 168388 ||| ||||||||||||| ||| || ||||| ||||| | |||||||| || || | Sbjct 35565 CTCACTGAAGGTGGCCAGGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCATGTCACAAC 35506 Query 168389 CAGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTC 168448 || || || | | ||||| |||||||| | ||||| || |||| |||| || Sbjct 35505 CAAGACATCCTGGGAATTTTGCAGAGAACATCTTAAGGAAGCAGGTGTGTACAGCCTCTC 35446 Query 168449 TCGCTCATCTTGAGTTACGAC 168469 || ||||| || || || || Sbjct 35445 TCTTTCATCCTGGGTCACCAC 35425 Score = 93.3 bits (102), Expect = 5e-14 Identities = 144/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 167898 GTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTT 167957 || ||||| |||| || || |||| ||| |||||||| || || || || |||| Sbjct 38273 GTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTCCCCACCTGTTTCTTG 38217 Query 167958 GGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTT 168017 || ||||| || || | ||||| || ||| ||| || ||||| | | | || | Sbjct 38216 GGGTCTTTGACCTGGAGGATGCTGGTAACAGATGTGGTCCCATTTGGGTTAGAGACAATC 38157 Query 168018 TTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGT 168077 | || || || |||||||||||||| ||||||||| | || | || || || ||| Sbjct 38156 TCAGTACTATTTTCAATCCCTGATCCACGGACCTTCCAGGAGATAATGGGGGCCGGGCGT 38097 Query 168078 GCTGTAGCAGAGCAGGTAATATTTA 168102 || || |||||||| || ||||||| Sbjct 38096 GCAGTGGCAGAGCAAGTGATATTTA 38072 >seq6250 Length=64387 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || Sbjct 28237 AGATACTTTGCTAGCTCACTAGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCC 28296 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || || || | ||| | ||||| | | || Sbjct 28297 GGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 28356 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||| | |||||||| |||||| || |||| |||||||||||||| | Sbjct 28357 AGAAAAGCATTGTAAAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 28416 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 28417 AGATAAAATTTACA 28430 >seq7637 Length=28832 Score = 84.2 bits (92), Expect = 3e-11 Identities = 211/320 (66%), Gaps = 3/320 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || || |||||| ||| || ||||| || Sbjct 13743 CAGATGCTCATCCAAACACTGGATGGCAAAGTGGTTGACGTCTGTGTCAAACTTATTGGC 13802 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | ||||| || || |||| || || |||||| | || || | ||| || Sbjct 13803 AAATAAGTGGTGC---TTGCAAAGCATCCTGTTCAAGTCTCCAGCTCCAAAAATGCAAAC 13859 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 | | | ||| || | | | |||||||| |||| || || || || ||||| || Sbjct 13860 CAAGCACACGTGGACCTCACTACCGGGCGGGTAGGGAGCGCCCTTAGCAACATCACCCTC 13919 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||| || || ||||||||||| | |||||||| || ||||| || | Sbjct 13920 AAAGTACTGGCATTTGACAAACCTGGCAGCTGTGTGCATGTCAGACAAGTCGTGCTTATG 13979 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| || | | || | || |||| | | || | |||||||| || | ||| Sbjct 13980 GCTCAAGGAGAAAGAGCCAGAGACTTCGGGAAACCTTTGGATAGTGGCCCAGAGATATTC 14039 Query 160352 GTCGGGGCTGTACGTGTCCT 160371 || | |||||| ||||||| Sbjct 14040 ATCTGAGCTGTATGTGTCCT 14059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576942372886920