Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6496 150 1e-31 seq2283 114 8e-21 seq2477 98.7 6e-16 seq101 82.4 5e-11 >seq6496 Length=1068356 Score = 150 bits (166), Expect = 1e-31 Identities = 172/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||||| ||| | |||| ||| ||||| ||||| ||||| || Sbjct 914129 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 914188 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | ||||| |||| ||||| ||||| || || |||||||| | ||||| || | || Sbjct 914189 AAGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGG 914248 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || ||| ||||| || || || | || ||| ||||| Sbjct 914249 ATGCCCTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCGA 914306 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 914307 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 914355 Score = 141 bits (156), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||| ||||| ||||| ||||| || | | ||||| |||| Sbjct 914372 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCT 914431 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||| |||||||| | |||||||| | || | ||||||||||| Sbjct 914432 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 914491 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| ||||| || || || | || ||| |||||| || | ||| |||| Sbjct 914492 TGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGG 914549 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| || ||||||||||| Sbjct 914550 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 914583 >seq2283 Length=901578 Score = 114 bits (126), Expect = 8e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | ||||||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 857288 CCACCCCTCAAGCGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAA 857229 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 857228 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 857169 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || || || | || || || || || || || | ||| ||| ||| | Sbjct 857168 ATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 857111 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||| ||||| Sbjct 857110 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCAT 857062 >seq2477 Length=1236505 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/194 (72%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||| | || || || || | |||| ||||| || || || || || Sbjct 1060104 CTCTTTCTGAATGCTGGGATCGGAAAGAGTGTGGCCATCCTCCAGCTGTTTGCCCGCAAA 1060045 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| | |||||||| | || | ||||||||||| | ||||| |||||| | Sbjct 1060044 TATCAGGTGCTGCTGGTCAAGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGAC--A 1059987 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || | | ||| ||| |||||| |||| ||| |||||||| ||| | |||||||| Sbjct 1059986 TTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCATCAGGGTCTTC 1059927 Query 34964 ACAAAGATCTGCAT 34977 ||||| |||||||| Sbjct 1059926 ACAAA-ATCTGCAT 1059914 >seq101 Length=343205 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931 ||||||||||| | ||||| |||||| || || || | ||| ||| |||||| | Sbjct 289096 CCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCT 289153 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||| |||||||| || || |||||||| |||||||||||||| Sbjct 289154 CAAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 289199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325540506759173