Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq7036 271 9e-68 seq1088 179 4e-40 seq6250 127 2e-24 >seq7036 Length=213198 Score = 271 bits (300), Expect = 9e-68 Identities = 659/992 (66%), Gaps = 7/992 (1%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||| | |||| || || |||||||||| || || ||| ||| || ||| Sbjct 123414 TTATGCCTCAGATGTTCATCCAGACACTGGATGGCAAAGTGGTCGACGTCCATGTCAAAC 123355 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| || | | || ||||| || | || || | ||| || Sbjct 123354 TTATTGGCAAACAAGTGGTGTG---TACGCAGCATCCAGTTCAAGTCTCCGGCTCCAAAA 123298 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || |||||||| | ||| |||| || || || | || || | ||| Sbjct 123297 ATGCACACCGAGCGCACGTGGATGCCATTGCAGGGTGGGTAGGGAGCACCCTTAGAAACA 123238 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| ||||| |||||||| || ||||| | | | ||||||||| || |||| Sbjct 123237 TCACCCTCATAGTACTGCCACTTGACAAACCTGGCAACCGACTGCATGTCAGACAAGTCG 123178 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | || | || | | || || || | || | || || | ||| ||||| Sbjct 123177 TACTTATGG-CTCAAGGAGAGTGAGCCCGGGACTTCAGGGATCCTTTGGATAGTGGCCCA 123119 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || ||||| || || || |||| || ||||||||| |||| || ||| Sbjct 123118 GAGATACTCATCTGGGCTGTATGTGTCCTGCGCCCACTCCATAAACTTTTGGATTTTTTC 123059 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 ||| | ||| | || || || |||| | || | ||| || || || || ||||| Sbjct 123058 ATCCTCTAGCACATACCCCACATACTCCCTGCTGACCACAAAATAGGCACTGCCTGAAAA 122999 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | | ||||| || ||||| | ||||||||||| | | |||| | Sbjct 122998 AAGAGGTGTTTCCAGTGGAGGACGCACTTTGACAGTCCCCGTGTTGACCAGCTTTCCATT 122939 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGA-CGGGTGTTCGGTCT 162604 || ||||| || ||| ||||||| | |||| ||| || | | ||||| | Sbjct 122938 AACAACCACATGCTGCTTTTTCCACCTTTCT-TCTTTATGGAAGGGCATCTTCTCGGTTT 122880 Query 162605 CTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAA 162664 | || ||||| |||| |||| ||| |||| | || || ||||| ||||| |||| Sbjct 122879 CAAGGCTGTTTTCACCCATGAAGGACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 122820 Query 162665 GGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACA 162724 ||||| || | ||||| ||||| || | || ||||| | || | || ||| | Sbjct 122819 TAGGAAAATCCATACCGCAAAGATTTATTAAGTACTTCCAGCGTGCACTCATTCTGTAGA 122760 Query 162725 GATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT 162784 | ||| | ||||| || |||||||| || ||||||||||| || || || || |||| Sbjct 122759 GGTCCCCCATGCAGTTGAGGTCGGCCTGAACCCGACTCCACGATGCATAAACCACACTCT 122700 Query 162785 CCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTG 162844 ||||| | |||| |||||||| || |||||| || | || ||| |||| || | Sbjct 122699 CCAACTGACTGGCCACAAAGACGTTCCTGAAACAGGACGCAATGCCCGTCACTGCAGCTA 122640 Query 162845 AGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGA 162904 |||| | || | ||| || || ||||| | ||| || | ||||||||| |||| Sbjct 122639 AGAAGGACTCTTCTGATTTTCTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGA 122580 Query 162905 TGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTA 162964 |||||||||| | || || | ||| || || || || || ||||| |||||||| |||| Sbjct 122579 TGGCCCTCAGCAGCCTGTCCAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTA 122520 Query 162965 TGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGTCCCTCACAA 163024 | || ||||| || || || ||| || | | | | || ||||| | | | | Sbjct 122519 TTGGAAACTCTGCTTCTTCTTTACTAAGGGGTTCCATGATATATTTGCGCCTCTTGATGA 122460 Query 163025 ACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | || ||||||| |||||||| | |||| Sbjct 122459 AAGACGTACAGTCCCTGGTCATGTTTATGTAG 122428 >seq1088 Length=453931 Score = 179 bits (198), Expect = 4e-40 Identities = 233/322 (72%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 |||||| || || |||| | || || || || || || ||||| |||| | | || Sbjct 35746 CATAGATGGTGAGGCAGGCTGTCCCTGAGATCTTCCCAGAACCAAAGATATTGTAGAGAC 35687 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||||| ||||| || || | || || || || Sbjct 35686 ACATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATAGTTGAGTTCTGGA 35627 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || ||||||| || |||||| || | ||||||||| ||||| || || Sbjct 35626 GTCCCAGCTCGGTGATGTTCATCCTGTCCTTATAGGCAGGCTGGACTACAACGCCATGGA 35567 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| ||||| ||||||| |||||| ||||| |||||| | |||||||| || || | Sbjct 35566 GCTCACTGAAGGTGGCCAGGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCATGTCACAA 35507 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 || || || | | |||| ||||| |||||||| ||||||||||||| || | Sbjct 35506 CCAAGACATCCTGGGAATTTTGCAGAGAACATCTTAAGGAAGCAGGTGTGTACAGCCTCT 35447 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| || || || ||||| Sbjct 35446 CTCTTTCATCCTGGGTCACCAC 35425 Score = 129 bits (142), Expect = 7e-25 Identities = 165/224 (74%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||| ||||||||| || || |||||||||| ||| | || | ||| |||||||||| Sbjct 38291 ACACTTTGTCTGAAGTAGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 38234 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || | || || ||||| || || || ||||| ||||||||||| ||||| Sbjct 38233 -TCCCCACCTGTTTCTTGGGGTCTTTGACCTGGAGGATGCTGGTAACAGATGTGGTCCCA 38175 Query 171623 TTACGATGTAGA-ACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || | | |||| || | | |||||||||||| || || ||||| || ||||| | Sbjct 38174 TTTGGGT-TAGAGACAATCTCAGTACTATTTTCAATCCCTGATCCACGGACCTTCCAGGA 38116 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 |||| || || || | ||||| ||||||||||| || |||| Sbjct 38115 GATAATGGGGGCCGGGCGTGCAGTGGCAGAGCAAGTGATATTTA 38072 >seq6250 Length=64387 Score = 127 bits (140), Expect = 2e-24 Identities = 419/640 (65%), Gaps = 15/640 (2%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 28187 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 28246 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || |||| || | || || | ||| |||||||| | ||| |||| | |||| Sbjct 28247 CTAGCTCACTAGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCCGGAATATAAT 28306 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || || || | ||||| | || |||| || || Sbjct 28307 TCTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 28366 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||| || ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 28367 TGTAAAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 28426 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | |||| ||| || || || | | ||| | ||| ||||| | | | Sbjct 28427 TACAAGTGGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAACGCTTG 28484 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 28485 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 28543 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 28544 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 28598 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | || || | || | | ||||| ||||| || ||||| || Sbjct 28599 TTCAAACACGAAGGGGTTGGTGCTCACTGTCAAGAAGCCATAAGGCACTTGGATATCTGA 28658 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGGC 177420 ||| || | || || | || || ||||| | || || ||||| | ||| ||| | Sbjct 28659 GTCACGGCGATAAGTCAGAGTCAGGTTGAATAAGTGCTCAATACCACTCTTTTGAGGCG- 28717 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || | | | Sbjct 28718 TGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCCTGCT 28777 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTG 177520 ||||| | || |||| ||| || |||| ||| || Sbjct 28778 GAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATG 28817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578154591243200