Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1088 228 9e-55 seq8239 167 3e-36 seq3235 154 2e-32 seq3495 118 1e-21 seq8887 91.5 2e-13 >seq1088 Length=453931 Score = 228 bits (252), Expect = 9e-55 Identities = 242/319 (76%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || | | |||| |||| || || ||| | | ||| || ||| Sbjct 35425 GTGGTGACCCAGGATGAAAGAGAGAGGCTGTACACACCTGCTTCCTTAAGATGTTCTCTG 35484 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| ||||| || || |||| || |||||||||| ||| | | ||||| Sbjct 35485 CAAAATTCCCAGGATGTCTTGGTTGTGACATGGCAGAAAAAGAAGGCTGTAAGCCCAGAA 35544 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 ||| || || || || | ||| || || || |||||||| || |||||||||| | Sbjct 35545 AACCTGGCCACCTTCAGTGAGCTCCATGGCGTTGTAGTCCAGCCTGCCTATAAGGACAGG 35604 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 || ||||||||| |||| |||||||| |||||||| ||||| || |||||||||||| | Sbjct 35605 ATGAACATCACCGAGCTGGGACTCCAGAACTCAACTATCACCTTCTGGAATACCACCCTG 35664 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| |||| || |||| || | |||||| |||||||| ||||| ||| Sbjct 35665 GAGGATGAAGGGTGTTACATGTGTCTCTACAATATCTTTGGTTCTGGGAAGATCTCAGGG 35724 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||| ||| Sbjct 35725 ACAGCCTGCCTCACCATCT 35743 Score = 170 bits (188), Expect = 2e-37 Identities = 204/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 ||||||||||| || || || || || |||| | || |||||||| || ||||| || Sbjct 38026 GTGCAGCCCACAGTATTCCTTCACTACAAATACTCGGAAGACCACCTAAATATCACTTGC 38085 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||| |||||| | || || | |||||| | || |||| |||||| Sbjct 38086 TCTGCCACTGCACGCCCGGCCCCCATTATCTCCTGGAAGGTCCGTGGATCAGGGATTGAA 38145 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| ||| || | || | | ||||| || || ||||| ||||| | ||||| Sbjct 38146 AATAGTACTGAGATTGTCTCTAACCCAAATGGGACCACATCTGTTACCAGCATCCTCCAG 38205 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| ||| |||| |||||||| |||||||| ||| ||||||||| Sbjct 38206 GTCAAAGACCCCAAGAAACAGGTGGGGAAGGAGGTGATCTGCCAGGTGCTGCACCTGGGG 38265 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || |||| || ||| ||| ||||| |||| Sbjct 38266 ACTGTGACCTACTTCAGACAAAGTGTGAGCAAAGGTA 38302 >seq8239 Length=161809 Score = 167 bits (184), Expect = 3e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || ||||| | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 148497 CTTTAGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 148556 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || |||||||||||||| ||||||| ||||||||||||||| || ||||| |||| Sbjct 148557 CGGCACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTT 148616 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| || ||| ||||| ||||||||||| Sbjct 148617 CACCACGTAGAACTGGCAGAGCGCGTGACACGGAGGCAGCGCCAT 148661 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| |||||||| |||||||| || ||||| |||| ||| || | |||| Sbjct 151803 GCCCCAAAATGCCTCCATTGGAAGCCATAAACTGGACCCAAGTCCCCTTCCCCTCTGGTG 151862 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | ||||| | |||| || | |||||||||||| ||||||| Sbjct 151863 GAGAATCCCAGGCCATCCAGAAAGCCTCGGGATCCATTGGCGTCCCAGATTTTCACTCCC 151922 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || || || |||| || ||||| ||| ||| || Sbjct 151923 TTGGAAGACAGTTCTTTAGCGTTTGTGGATCCCTGGAAGA 151962 >seq3235 Length=211937 Score = 154 bits (170), Expect = 2e-32 Identities = 133/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 75991 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 76050 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| ||||| || ||||| || |||| Sbjct 76051 TGCCACAGGCGGAGAACCAC------------GGCCCAGACATCAAAGAGCACGTGAACT 76098 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| |||||||| ||||| || || ||| ||||||||| ||| Sbjct 76099 CCCTGGGAGAAAAGCTGAAGACGCTGAGGCTGAAGCTGCGGCGCTGT 76145 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 78409 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 78468 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| || ||||||| || |||| Sbjct 78469 TAGAAGCCTATATGACAATGAAGATGA 78495 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 178081 AGTCTGAAAACAATTGCACTCACTTTCCAACCAGTTTGCCTCACATGCTCCATGAGCTCC 178140 ||||||| |||| ||||| ||||| ||| |||| ||||||||||||||| ||||||| Sbjct 74721 AGTCTGAGAACAGCTGCACCCACTTCCCAGCCAGCCTGCCTCACATGCTCCGAGAGCTCC 74780 Query 178141 GGGCCGCTTTTAGCAGAGTAAAGACttttttt 178172 | || || || |||| || |||||||| ||| Sbjct 74781 GAGCTGCCTTCGGCAGGGTGAAGACTTTCTTT 74812 >seq3495 Length=545169 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | |||| | | ||||| ||||||| |||| |||||||| Sbjct 112433 GTACTCGCTGGTATTTATCATTGGCGTGGTCGGCAACATCCTGGTGGTCCTGGTCCTCAT 112492 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||||||||| | |||||||| ||||| ||| ||||||||||||| || Sbjct 112493 GCAGTACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCCTCTCCGA 112552 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 112553 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTAACT 112590 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||| | Sbjct 113149 TGGACCTGGCCATGCAGGTGACGGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCGG 113208 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 | ||||| || ||||| ||||| | ||||| | || |||| Sbjct 113209 TGATCTATGCCTTTGTCGGCGAGAGGTTCCGAAAGTACCT 113248 >seq8887 Length=65640 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| ||||||| | |||||||| | ||||| ||||| |||| |||| ||| Sbjct 50220 TACTCGTTGGTGTTCATCTTTGGGCTTGTGGGCAACATGCTGGTCGTCCTCATCCTGATA 50161 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| | ||||| || |||||| |||||| |||| ||||||||||| | |||| Sbjct 50160 AACTGCAAAAAGCTCAAGAGCATGACTGACATCTACCTGCTCAACCTGGCCATCTCTGAC 50101 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | ||||| |||| || ||| Sbjct 50100 CTGCTTTTCCTGCTCACCATCCCATTCTGG 50071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583208166448800