Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1120 145 6e-30 seq194 113 4e-20 seq8239 102 6e-17 seq7660 91.5 1e-13 seq1400 89.7 4e-13 seq5886 86.0 5e-12 >seq1120 Length=290241 Score = 145 bits (160), Expect = 6e-30 Identities = 273/392 (70%), Gaps = 7/392 (2%) Strand=Plus/Minus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | || ||||||||| | ||| | ||| | || ||| | | Sbjct 277128 CAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGATTATATAAGAAAACTGGTAAACTGGT 277069 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 |||||| || || || ||||| |||||||| |||| || |||||||| ||| | | | Sbjct 277068 ATTTCTTGGATTGGATAATGCGGGAAAAACAACATTGCTACACATGCTAAAAGATGACAG 277009 Query 47320 CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCAT 47379 | | | ||| ||| ||||||||||| || || ||| |||| || ||||||||||| Sbjct 277008 ACTTGGACAACATGTCCCAACATTACATCCCACTTCAGAAGAACTGACCATTGCTGGCAT 276949 Query 47380 AACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTA 47439 || |||| || |||||| | || ||||| ||||||| || ||| ||||| |||| || Sbjct 276948 GACTTTTACAACTTTTGATCTGGGTGGACATGTTCAAGCTCGAAGAGTGTGGAAAAACTA 276889 Query 47440 TTTTCATGTCGTTGATGCTATAGTTTATATTGTAGACTGTGCAGA-TTTGACTAGACTGA 47498 || || | ||| || || | | | || || |||||||| ||| || |||| Sbjct 276888 CCTTGCTGCTATCAATGGCATTGTATTTTTGGTGGATTGTGCAGACCATGA-AAGGCTGA 276830 Query 47499 CAGAGGCAAAAATCGAATTCGATGCGTTGTTAAACGATG-AACTGTTACACGATGTTCCT 47557 |||| ||||| ||| | ||| | | | | |||| ||| || | |||| ||| Sbjct 276829 TAGAGTCAAAAGAAGAACTTGATTCACTAATGACAGATGAAACCATTGC-TAATGTGCCT 276771 Query 47558 AT-TTTAGTGTTGGGCAATAAAATCGACAAAC 47588 || | | | ||||| ||||| ||||||| || Sbjct 276770 ATACTGATTCTTGGG-AATAAGATCGACAGAC 276740 >seq194 Length=1934172 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 225086 CAAGAAGTTCAGATTA-CAGAAGCTCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 225144 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || ||||| ||||| |||||| Sbjct 225145 CATACATTCTGAAATGTATAGTCTCCTTATTGATACTTACATTAAAGAT 225193 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 226876 GGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 226935 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| ||||||| || | || ||||| ||||| | Sbjct 226936 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTT 226995 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 226996 ATTAGCAGAGATGA 227009 >seq8239 Length=161809 Score = 102 bits (112), Expect = 6e-17 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || ||||| | | || ||||| ||||| || ||||| |||| Sbjct 148663 TGATGGCGCTGCCTCCGTGTCACGCGCTCTGCCAGTTCTACGTGGTGAACGGTGAGCTGT 148604 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || | || || |||||||| || || || ||||| ||||| || | Sbjct 148603 CCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCGTGCCGTTCAACATCGCCA 148544 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 | || || ||||||||||| ||||| |||||| | ||| | |||| Sbjct 148543 GCTACGCCCTGCTCACGTACATGATCGCACACATCACCGGTCTAAA 148498 >seq7660 Length=14355 Score = 91.5 bits (100), Expect = 1e-13 Identities = 277/428 (65%), Gaps = 0/428 (0%) Strand=Plus/Minus Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275 ||| | || || ||||||| || | ||||| || ||| | |||| | || || ||| Sbjct 9713 GTGCTCCAGTTCCTAGGACTCTACAAGAAATCTGGAAAACTTGTATTCTTGGGTTTGGAC 9654 Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAAC 47335 ||||| |||||||| | | || |||||||||||| | | | || | || Sbjct 9653 AATGCGGGAAAAACCACTCTTCTTCACATGCTCAAAGATGACAGATTGGGCCAACACGTT 9594 Query 47336 CCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTT 47395 || ||| | |||||||| || ||| | | ||||||||||| || || |||| || ||| Sbjct 9593 CCAACACTGCATCCGACATCAGAAGAGCGGACAATTGCTGGAATGACTTTTATAACTTTT 9534 Query 47396 GATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGAT 47455 ||| | || || || ||||| || | | ||| |||||||| | | | || || Sbjct 9533 GATCTTGGTGGGCATGAGCAAGCACGACGGGTTTGGAAAAATTATCTCCCAGCAATTAAT 9474 Query 47456 GCTATAGTTTATATTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAATCGAA 47515 | || || | | | || |||||||| ||| || | || | || | ||| | || Sbjct 9473 GGGATTGTCTTTCTGGTGGACTGTGCTGATCATTCTCGCCTCATGGAATCCAAAGTTGAG 9414 Query 47516 TTCGATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGGCAAT 47575 | |||| || | | |||||| || | |||| || || | | ||||| || Sbjct 9413 CTTAATGCTTTAATGACTGATGAAACAATATCCAATGTGCCAATCCTTATCTTGGGTAAC 9354 Query 47576 AAAATCGACAAACAAAACGCGATAGGAGAAGTTGAACTTCGCCATATATTTGGAATATAC 47635 ||||| |||| | | | || || | |||| |||| || | |||||||| | || Sbjct 9353 AAAATTGACAGAACAGATGCAATCAGTGAAGAAAAACTCCGTGAGATATTTGGGCTTTAT 9294 Query 47636 GGACAAAC 47643 ||||| || Sbjct 9293 GGACAGAC 9286 >seq1400 Length=560904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 43839 TTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGG 43898 |||| || | ||| |||| || ||||| || ||| |||| | ||| ||||| || | | Sbjct 277521 TTATGTCGTGTGTTCTGGCTTTCTTTGCAGCAAGCAACGGCAGAGTAAATGACAACTGAG 277580 Query 43899 TTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAA 43957 | || ||| ||||| ||||| ||||| |||||| | ||||| ||||| || ||| Sbjct 277581 TGGAGCGTTTTAGCCAAGACGTTCAGATTAC-AGAAGCCCACTGTTTCTATGGCTTCCAA 277639 Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 |||||||| |||| || ||||| || ||||| ||| Sbjct 277640 ATTGCCATGTAAAACATACATTCTGAGATGTATAGT 277675 >seq5886 Length=918977 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| ||| |||| |||||||| || ||||| | Sbjct 166724 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTGCAAGGAAAAACAAATTTCTTTGAGA 166665 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| || ||||| Sbjct 166664 AACGAGTTTCAGAGTACCAGCG 166643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397270150443835