Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2283 141 1e-28 seq6496 132 5e-26 seq4625 132 5e-26 seq573 118 1e-21 seq4169 114 1e-20 seq1562 107 2e-18 seq2477 104 3e-17 seq83 91.5 2e-13 seq6200 82.4 9e-11 seq100 82.4 9e-11 >seq2283 Length=901578 Score = 141 bits (156), Expect = 1e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 857061 AATGCAAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 857120 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| ||||||| || || ||||| || || || || || || ||||| Sbjct 857121 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCA 857180 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| ||| || || | ||||| || Sbjct 857181 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCCGACTACAA 857240 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 |||| || || || || || || || ||| Sbjct 857241 CATCCAGAAAGAGTCGACCCTGCACCTGGTC 857271 >seq6496 Length=1068356 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | | Sbjct 914584 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 914525 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | ||||| || || || ||||||||||| || || || ||||| Sbjct 914524 CGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 914465 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| || ||| | | ||||| || Sbjct 914464 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAA 914405 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || || | ||||| | ||||| Sbjct 914404 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGG 914357 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 914355 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 914296 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||||||||| || || || || ||| Sbjct 914295 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCAG 914236 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||| | | ||||| || Sbjct 914235 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAAC 914176 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| || || ||||| || || | ||| |||| Sbjct 914175 ATCCAGAAAGAGTCCACCCTGCACTTGGTCCTGCG 914141 >seq4625 Length=314844 Score = 132 bits (146), Expect = 5e-26 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 || || || || || ||||| || ||||| || ||||| ||||||| | |||| Sbjct 137260 ATTTTCGTAAAAACCCTTACAGGGAAGACCATCACTCTCAAGGTTGAACCCTCAGATACA 137201 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || |||| | ||| | || || ||||| ||||| ||||||||| | |||||||| | Sbjct 137200 ATAAAAAATGTAAAGACCAAGATCCAGGATAAGGAAGGAATTCCTTCTGACCAGCAAAGA 137141 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || ||||||||||| |||||||| || |||| ||||| | |||||||| | ||| Sbjct 137140 CTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTATAACATTCAA 137085 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTC 27625 ||||| ||||||||||||| || ||| | |||| Sbjct 137084 AAGGAGACCACTCTTCATCTTGTGTTGAGACTTC 137051 >seq573 Length=363558 Score = 118 bits (130), Expect = 1e-21 Identities = 148/202 (73%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || ||||| || ||||| ||||||| || |||| || | |||| | |||||||| Sbjct 312125 GGGAAGACCATCACTCTCAAGGTTGAATCCTTGGATATAATAGAAAATGTAAAGGCTAAG 312066 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA--TTTTTGCTGGTAAGC 27550 || ||||| || || ||||||||||| || ||||| | |||| |||||||||| |||| Sbjct 312065 ATCCAGGATAATGAAGGAATTCCTCCTGATCAGCAAAGACTAATTTTTTTGCTGGCAAGC 312006 Query 27551 AACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATC 27610 |||| | |||| |||| | || || || | |||||||| | ||||||||||| Sbjct 312005 AACTGCAAGATGGATGTACTTT----GATTACAACATTCAAAAGGAGTGCACTCTTCATC 311950 Query 27611 TAGTCTTGCGTCTTCGCGGTGG 27632 | || ||| | |||| ||||| Sbjct 311949 TTGTGTTGAGACTTCATGGTGG 311928 >seq4169 Length=151675 Score = 114 bits (126), Expect = 1e-20 Identities = 166/230 (72%), Gaps = 11/230 (5%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || | ||||| || |||||||| |||| ||||| || | Sbjct 18323 ATGCAGATTTTCGTAAAAGCCCTTACAGGGAAGACTATCGCTCTCGAGGTCGAACCCTCG 18264 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| | | |||| | ||||| || || ||||| ||||| ||||||||| || ||| Sbjct 18263 GATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCT---GATCAG 18207 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATC--GTACCCTAGCAGACTATA 27583 || | || ||||||||||| |||||||| || |||| | |||| | ||||| | Sbjct 18206 CAA-GACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACACGTACTTT----GACTACA 18152 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT-CGCGGTGG 27632 | | |||||||| |||||||||||||| | ||| | ||| || ||||| Sbjct 18151 ACATTCAAAAGGAGTCCACTCTTCATCTTGCGTTGAGACTTCCGTGGTGG 18102 >seq1562 Length=962321 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | || || ||||| || ||||| | | ||| ||||||| | Sbjct 540857 ATGCAGATTTTCATAAAAACCCTTACAGGGAAGACCACCATTCTCAAGGTTGAACCCTCA 540916 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| | | |||| | |||| || || ||||| ||| | ||||||||| || ||| Sbjct 540917 GATACAACAGAAAATGTAAAGGTCAAGATCCAGGATAAGCAAAAAATTCCTCCTGATCAG 540976 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||||||||| |||||||| || ||| |||| | | ||||| || Sbjct 540977 CAAAGATTGATTTTTGCTGGCAAGCAACTGGAATATGGAAGTACTTTGTCTGACTAGAAC 541036 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||||||||| || || ||| | ||||| ||||| Sbjct 541037 ATTCAAAAGGAGTCCACTCTTCACCTTGTGTTGAGACTTCGTGGTGG 541083 >seq2477 Length=1236505 Score = 104 bits (114), Expect = 3e-17 Identities = 118/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || | |||||||| || || |||||||| ||| | || Sbjct 1059914 ATGCAGAT-TTTGTGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1059972 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || || ||||| || ||||||||||| || || | |||||| Sbjct 1059973 GACACCACTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACTTGACCAG 1060032 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 |||| || || ||||| || || || || ||||||| Sbjct 1060033 CAGCACCTGATATTTGCGGGCAAACAGCTGGAGGATG 1060069 >seq83 Length=489730 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27438 GACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCA 27497 |||||| | |||||||||||| | |||| | || || ||| | || ||||||| || Sbjct 29628 GACTATCAGCCTTGAGGTTGAGCCCAGTGACACCACTGAGAATGTCAAAACTAAAATCCA 29687 Query 27498 GGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGA 27557 ||||||||||| ||||| || ||||||||| ||| || ||||| | || || || || Sbjct 29688 AGACAAGGAGGGCATTCCACCTGACCAGCAGTATCTGATATTTGCAGAGAAACAGCTGGA 29747 Query 27558 GGATGATC 27565 ||||| || Sbjct 29748 GGATGGTC 29755 >seq6200 Length=515973 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| || | |||||||||||||| || || ||| | ||||| || |||| Sbjct 124343 ACTATTGTGAATTTGGCTCAGAACTTTGTGGGAAGTAACAACATTAACTTGCTTCAGCCT 124402 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || ||||| |||||||| |||||||| ||| | ||||| || Sbjct 124403 ATTGGTCAGTTTGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTATATT 124462 Query 32245 TTCAC 32249 ||||| Sbjct 124463 TTCAC 124467 >seq100 Length=248564 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| | || || |||||||| ||||| ||| ||||| || ||| | | |||| Sbjct 123874 ACCATTATAAATCTGGCTCAGAATTTTGTGGGTAGCAATAATCTAAACCTCTTGCAGCCT 123815 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| |||| |||||||||||| |||| || | || |||||| Sbjct 123814 ATTGGTCAGTTTGGTACCAGGCTACATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 123755 Query 32245 TTCAC 32249 ||||| Sbjct 123754 TTCAC 123750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570036886261040