Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq8239 149 5e-31 seq2660 109 4e-19 seq1856 82.4 6e-11 >seq8239 Length=161809 Score = 149 bits (164), Expect = 5e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| ||||||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 148500 TAGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 148559 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060 || || || |||||||| ||||||| |||||| ||||| || || ||||| |||| Sbjct 148560 CACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 148619 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 |||||| ||||| || | ||||| |||||||| || ||||| || Sbjct 148620 CACGTAGAACTGGCAGAGCGCGTGACACGGAGGCAGCGCCATCAG 148664 Score = 98.7 bits (108), Expect = 8e-16 Identities = 125/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||||||||| ||||| || || || || |||| ||| Sbjct 151787 CATATCTTTGTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAAACTGGACCCAAGTC 151846 Query 30283 TCCCTCTTCCCTGTGCTCGA--AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 30340 || || |||| || | || | ||| |||| |||| ||| ||| || |||||| Sbjct 151847 CCCTTC--CCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGCCTCGGGATCCATTGGCG 151904 Query 30341 TCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||||| || || ||||| ||| || ||||| | ||||||||| || Sbjct 151905 TCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGCGTTTGTGGATCC 151954 >seq2660 Length=345280 Score = 109 bits (120), Expect = 4e-19 Identities = 181/259 (70%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || | || || || || || || || ||||| || || ||||| | Sbjct 297290 ATGAGCTCCTTGTGGAGTTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTT 297349 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| || || |||||||| ||||| | || Sbjct 297350 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATAATCACTAGATT 297409 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558 ||| || ||| |||||||| || | ||||| | | || | || || || || | Sbjct 297410 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTGGAAATACTTGAATTCATTCCT 297469 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 110617 ||| || |||| ||||| || ||||| || || ||||||||| ||||| || Sbjct 297470 GAGT------GGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GACA 297522 Query 110618 CGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 297523 CAGCGACGATGCAGTTTAG 297541 >seq1856 Length=877339 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || || || ||||| || || ||||| | | ||||| |||||| || || Sbjct 114205 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 114146 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || |||||||| ||||||| ||||| || ||| Sbjct 114145 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 114098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406120410145764