Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2660 221 1e-52 seq1088 168 6e-37 seq2211 122 7e-23 >seq2660 Length=345280 Score = 221 bits (244), Expect = 1e-52 Identities = 384/552 (70%), Gaps = 11/552 (2%) Strand=Plus/Minus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || |||||||| || | ||||| || | || ||||||||||| || || || | ||| Sbjct 297544 ACGCTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATTGGCAAGAACGGGGACCTG 297485 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCC 2253 || ||||| || || | |||||||| || |||| ||||||||||| | | ||||| Sbjct 297484 CCCTGGCCCCCACTCAGGAATGAATTCAAGTATTTCCAAAAAATGACCACAACCTCTTCA 297425 Query 2254 ACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATT 2313 || ||||||||| | || |||||||| || || || ||||| || |||| | Sbjct 297424 GTAGAAGGTAAACAGAATCTAGTGATTATGGGTAGGAAAACCTGGTTCTCCATTCC--TG 297367 Query 2314 AAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGC 2371 | ||| | | ||||| || ||||||| ||| | ||||| |||||| | || || || Sbjct 297366 AGAAGAATCGACCTTTAAAGGACAGAATTAATGTAGTTCTTAGTAGAGAACTCAAGGAAA 297307 Query 2372 CACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAG 2431 | |||| || ||||| ||||| || |||||| | | | | || || ||| | || | Sbjct 297306 CTCCACAAGGAGCTCATTTTGTGGCTAAAAGTCTGGGTGATGC-CTTAAAACT-TACTGA 297249 Query 2432 G--ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTA 2489 | |||||| ||| | | | || || | | |||||||| | || || || ||||| || Sbjct 297248 GCAACCAGAGTTAGCAAATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTA 297189 Query 2490 TGAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAA 2549 | |||| ||| | | | || | | | |||||| | |||||||| |||| | Sbjct 297188 TAAGGAAGCCATGAATCAACCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGA 297129 Query 2550 ATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGA 2609 |||||| | || |||| || ||||||||| || | | ||||| |||| || | || Sbjct 297128 CTTTGAAAGCGACACATTTTTTCCAGAAATTGATTTGAAGAAATATAAACTTCTCTCAGA 297069 Query 2610 ATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGAT 2669 || |||||||||| |||| || || || || || || |||| ||||||||||| | Sbjct 297068 ATACCCAGGTGTTCTTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGT 297009 Query 2670 ATATGaaaaaaa 2681 ||||||||| || Sbjct 297008 ATATGAAAAGAA 296997 >seq1088 Length=453931 Score = 168 bits (186), Expect = 6e-37 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 1291 TTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATG 1350 |||| |||||||| ||| || || ||||||||||||| ||||||| || ||| | Sbjct 35507 TTGTGACATGGCAGAAAAAGAAGGCTGTAAGCCCAGAAAACCTGGCCACCTTCAGTGAGC 35566 Query 1351 ACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGAC 1410 ||| || ||||| || ||||| || || || || | |||||||| || ||||| |||| Sbjct 35567 TCCATGGCGTTGTAGTCCAGCCTGCCTATAAGGACAGGATGAACATCACCGAGCTGGGAC 35626 Query 1411 TACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAGT 1470 | || ||| ||||||| ||||||||||| || || |||| ||||||||||| |||| || Sbjct 35627 TCCAGAACTCAACTATCACCTTCTGGAATACCACCCTGGAGGATGAAGGGTGTTACATGT 35686 Query 1471 GTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACC 1523 || | | || | ||||| ||||||||||| ||||| | || || || ||| Sbjct 35687 GTCTCTACAATATCTTTGGTTCTGGGAAGATCTCAGGGACAGCCTGCCTCACC 35739 >seq2211 Length=369694 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 204289 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 204230 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 204229 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 204170 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 204169 ATCGCCCTGTGGATGACTGA 204150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414282991554988