Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6496 100 2e-16 seq4569 87.8 1e-12 >seq6496 Length=1068356 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 914584 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 914525 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | | ||||| || || | || || || | Sbjct 914524 CGACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAGGGCATCCCCCCTGACC 914466 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || |||||||| || || |||||||| | ||||| || ||| |||| Sbjct 914465 AGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACA 914406 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 914405 ACATCCAGAAAGAGTCCAC 914387 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 914355 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 914296 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | | ||||| || || | || || ||||| Sbjct 914295 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAGGGCATCCCCCCTGATCA 914237 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || |||||||| | ||||| || ||| ||||| Sbjct 914236 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAA 914177 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 914176 CATCCAGAAAGAGTCCAC 914159 >seq4569 Length=367135 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | |||||||| | ||| || || |||| | | || || || || Sbjct 167394 AAGATGCAGATTTTCATAAAAACCCTTATGGGGAAGACCATCATTTTTGAGGTCGAACCC 167335 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | ||| | |||| || || | | || ||||| | || || || Sbjct 167334 TCGGACACTATATAAAAAGGAAAAGCCAAGATCCCGCATAAGGAAGGAATTCCTCCTTAT 167275 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | | | |||| || || Sbjct 167274 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGTCCTTTGTCAGACCAC 167215 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||| ||| || ||| | || || || Sbjct 167214 AACATTCAAAAGGAGCTCACTTTTCATCTTGTGTTGAG 167177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337851547450436