Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6496 150 4e-31 seq2283 136 9e-27 seq1562 127 5e-24 seq4569 98.7 2e-15 seq268 96.9 8e-15 seq5085 93.3 1e-13 seq1065 91.5 4e-13 >seq6496 Length=1068356 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| || ||||| ||||| |||| ||||| |||| ||| || | |||||| Sbjct 914143 CAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATC 914202 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||||||||| ||||| || | || || || || || || || |||||||| Sbjct 914203 TTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTGTC 914262 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 914263 TTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 914322 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 914323 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 914355 Score = 150 bits (166), Expect = 4e-31 Identities = 168/223 (75%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| ||||| |||| ||||| |||| ||| || | ||||||| Sbjct 914372 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCT 914431 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || || ||||||||| Sbjct 914432 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 914491 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| ||||||||||| || || || || | ||||| ||| Sbjct 914492 TGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTC 914551 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTTAC 225724 ||||| |||| || || | ||| | |||||| | | ||||| Sbjct 914552 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATTGTCT-GTTAC 914593 >seq2283 Length=901578 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| ||||| |||| | ||| | |||||| Sbjct 857273 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCT 857214 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || ||||| || || Sbjct 857213 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCC 857154 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 857153 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 857094 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | || | ||||||||| Sbjct 857093 TTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 857059 >seq1562 Length=962321 Score = 127 bits (140), Expect = 5e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| |||||||| |||||||| || ||||| | || || || | |||||| Sbjct 541078 ACGAAGTCTCAACACAAGGTGAAGAGTGGACTCCTTTTGAATGTTCTAGTCAGACAAAGT 541019 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||| ||| || ||||| ||||| || || | || ||| || || || ||||| Sbjct 541018 ACTTCCATATTCCAGTTGCTTGCCAGCAAAAATCAATCTTTGCTGATCAGGAGGAATTTT 540959 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||| || |||||||| ||| ||| ||| | || ||||||| ||| || | | Sbjct 540958 TTGCTTATCCTGGATCTTGACCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTTGAG 540899 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || | ||||| || || | ||||||||||| | ||||| || Sbjct 540898 AATGGTGGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCATCTT 540854 >seq4569 Length=367135 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/224 (70%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||||| || | |||| || ||||| | |||| || | ||||| | || Sbjct 167176 TCTCAACACAAGATGAAAAGTGAGCTCCTTTTGAATGTTGTGGTCTGACAAAGGACATCC 167235 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || ||||| ||||| || || |||| ||| || | || ||||| |||||||| Sbjct 167236 ATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATAAGGAGGAATTCCTTCCTT 167295 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 | ||||||| || | || || ||||| |||| ||| || || || |||| Sbjct 167296 ATGCGGGATCTTGGCTTTTCCTTTTTATATAGTGTCCGAGGGTTCGACCTCAAAAATGAT 167355 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT-TTTATGG 225720 ||||| ||| | | ||||||||||| | ||||| || |||| Sbjct 167356 GGTCTTCCCCATAAGGGTTTTTATGAAAATCTGCATCTTGATGG 167399 >seq268 Length=845590 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/222 (70%), Gaps = 12/222 (5%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||||| | | |||||| || ||||| | ||||| || ||||| Sbjct 40060 AGTCTCAACACAAGATAAAAAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTATGT 40115 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGA-TAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||||| | || ||||| ||||| || | | |||| ||| ||||| || ||||| ||||| Sbjct 40116 CCATCGCCCAGGTGCTTGCCAGCAAAAAATCAGTCTTTGCTGGTCAGGTGGAATTCCTTC 40175 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 | | ||||||||||| ||| ||| ||| ||||||| ||| | | | || Sbjct 40176 CCTATCTTGGATCTTGGCCTTTACATTTTC-------TCTGAGGGTTCACCCTGAACAGT 40228 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| ||||| || || | ||||||||||| | ||||| || Sbjct 40229 GATGGTCTTCCCTGTAACGGTTTTTATGAAAATCTGCATCTT 40270 >seq5085 Length=468465 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || ||| | || ||| || ||||| |||||||||||||||| Sbjct 17126 CACTTCAGTACCTGGCTCCCTACTCTGGCTGTTCCATGGGAGAGTATTTTAGAGATAATG 17067 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | ||||||||||| |||||||| || || ||| ||||| |||| Sbjct 17066 GCAAACATGCTTTGATCATCTATGACGACTTATCCAAACAGGTCAA 17021 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || |||||||| ||||| || ||||| || || || |||||||| |||||||| || ||| Sbjct 16694 TGTCCATCAGTGATAGAAATGACATTCGTTGGAATGTAAGCAGACACATCACCAGCCTGT 16753 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||| | || ||||| || || | || |||||||||||| Sbjct 16754 GTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCACCAAAA 16795 >seq1065 Length=383968 Score = 91.5 bits (100), Expect = 4e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||| ||||| | |||||| | || ||||| || ||||| || | || || ||| Sbjct 247965 CTCAACACAAGATAAAGAGTGAACTCCTTTTGAACTTTGTAGTCAGACAGAGAATGTCCA 248024 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 |||||||| | | ||||| ||| | ||| ||| || || || ||||| ||||||| Sbjct 248025 TCTTCTAGGTTTCTGCCAGCAAAGGTCAGTTTTTGCTGATCAGGAGGAATTTCTTCCTTA 248084 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || |||||||| ||||| | || || || || ||| ||| || | | ||||| Sbjct 248085 TCCTGGATCTTGGCCTTCATATTGTCTATTGTATCCAAGGGTTCAACTTTAAGAGTGATG 248144 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || | || ||||||||| | ||||| || Sbjct 248145 GTTTTCCCTGTAAGAGCTTTTATGAAAATCTGCATCTT 248182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191944978866698