Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq8239 150 1e-31 seq2660 100 2e-16 seq1856 82.4 6e-11 >seq8239 Length=161809 Score = 150 bits (166), Expect = 1e-31 Identities = 133/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| ||||||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 148500 TAGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 148559 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || |||||||| || |||| |||||| |||||||| || ||||| |||| Sbjct 148560 CACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 148619 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 |||||| ||||| || | || || |||||||| || ||||| ||| Sbjct 148620 CACGTAGAACTGGCAGAGCGCGTGACACGGAGGCAGCGCCATCAGA 148665 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/148 (73%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA-- 30074 ||||||||||| ||||| || || || || |||| ||| || || |||| || | || Sbjct 151809 AAATGCCTCCATTGGAAGCCATAAACTGGACCCAAGTCCCCTTC--CCCTCTGGTGGAGA 151866 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 | ||| |||| |||| ||| ||| || |||||||||||||| || || ||||| Sbjct 151867 ATCCCAGGCCATCCAGAAAGCCTCGGGATCCATTGGCGTCCCAGATTTTCACTCCCTTGG 151926 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||| | ||||||||| || Sbjct 151927 AAGACAGTTCTTTAGCGTTTGTGGATCC 151954 >seq2660 Length=345280 Score = 100 bits (110), Expect = 2e-16 Identities = 179/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || | || || || || || || || ||||| || | ||||| | Sbjct 297290 ATGAGCTCCTTGTGGAGTTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTT 297349 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| || || |||||||| ||||| | || Sbjct 297350 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATAATCACTAGATT 297409 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| |||||| | ||||| || | ||||| | | || | || || || || | Sbjct 297410 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTGGAAATACTTGAATTCATTCCT 297469 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 114500 ||| || |||| ||||| || ||||| || || ||||||||| ||||| || Sbjct 297470 GAGT------GGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GACA 297522 Query 114501 CTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 297523 CAGCGACGATGCAGTTTAG 297541 >seq1856 Length=877339 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || || || ||||| || | ||||| | | ||||| |||||| || || Sbjct 114205 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 114146 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || |||||||| ||||||| ||||| |||||| Sbjct 114145 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 114098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405973278976162