Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq194 104 2e-17 seq1400 96.9 3e-15 seq5886 82.4 7e-11 >seq194 Length=1934172 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | |||||||| | |||| || || Sbjct 227009 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 226950 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| |||||||| || || ||||| ||| Sbjct 226949 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 226890 Query 4692 AC 4693 || Sbjct 226889 AC 226888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| ||||| || || || || |||||||||||||||||||| ||||| || ||| Sbjct 225192 TCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 225133 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || || || | ||||||||| | |||||||| | | ||||| Sbjct 225132 ATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATC 225078 >seq1400 Length=560904 Score = 96.9 bits (106), Expect = 3e-15 Identities = 182/264 (69%), Gaps = 13/264 (5%) Strand=Plus/Minus Query 4737 AATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---AT 4793 || ||||||| || || ||||| || || || || || | || || || || | || Sbjct 277771 AAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATCGTTTCAATGGCATTGAAGAGAAAT 277712 Query 4794 TTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | |||| || ||| |||| ||| ||||| || || | |||||||| ||||| Sbjct 277711 TCCCTTTCTT----TGGAATCTTTAAT----GTGTCCATGAGGAA-CTATACATCTCAGA 277661 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912 |||||| |||| || ||||| || || || || || || |||||||| | ||||| Sbjct 277660 ATGTATGTTTTACATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCTGAAC 277601 Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972 || | | ||| | || ||| |||| || |||||| | |||| || |||||||| || Sbjct 277600 GTCTTGGCTAAAACGCTCCACTCAGTTGTCATTTACTCTGCCGTTGCTTGCTGCAAAGAA 277541 Query 4973 CGCCAAAACATGAGATATAAAGTA 4996 |||| |||| || |||| ||| Sbjct 277540 AGCCAGAACACACGACATAAGGTA 277517 >seq5886 Length=918977 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || ||||||||||| ||||| || || | ||||| || Sbjct 178380 TACCAAATTTTCATTTACAATTCCATCACTGGCTGCGAAAAAGGCTAAGATGTGAGAGAT 178439 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| |||| || || | ||||| || |||||||| || | ||| || | ||| || || Sbjct 178440 AAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAGTCGAC 178499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426849912541211