Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq194 125 1e-23 seq1400 114 2e-20 seq98 114 2e-20 >seq194 Length=1934172 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| |||||||| ||||| ||||| ||| Sbjct 227009 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 226950 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| |||||||| || || ||||| || Sbjct 226949 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 226891 Score = 104 bits (114), Expect = 3e-17 Identities = 106/138 (77%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| | Sbjct 228515 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 228456 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 |||||||| || || | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 228455 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 228396 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 228395 CATAAAGTCAAATGGATT 228378 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||||| ||||||||| || | |||||||||||||| || || || | Sbjct 225203 TTTCTTTGGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 225144 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 225143 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTC 225089 >seq1400 Length=560904 Score = 114 bits (126), Expect = 2e-20 Identities = 168/236 (71%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||| || ||||||||||| ||||||||||| ||||| || ||||| |||||||| | Sbjct 277768 GCCCAGTCTGCCTTCTTCTTCACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCC 277709 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 |||| ||| ||||||| | || || || | | ||||||||| || || || || Sbjct 277708 CTTTCTTTGGAATCTTTA----ATGTGTCCATGAGGA-ACTATACATCTCAGAATGTATG 277654 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 |||| || || || || || || || ||||| |||||||| ||||| || || Sbjct 277653 TTTTACATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCTGAACGTCTTGG 277594 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | ||| || || | | || ||||||||| | || | || || ||||| || || Sbjct 277593 CTAAAACGCTCCACTCAGTTGTCATTTACTCTGCCGTTGCTTGCTGCAAAGAAAGC 277538 >seq98 Length=373882 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| | || Sbjct 70747 TGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 70688 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 70687 TCATTATTGCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 70628 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 70627 TTTCTTACACCAT 70615 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| || || Sbjct 49181 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 49122 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || ||||| || |||||| || || | ||| | ||||||| Sbjct 49121 TATGTTTCAATTGCAGCATCAATGTCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 49062 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 49061 ATATGCTGTGGTCTTTCAGCC 49041 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| ||||||| || ||||| | || | ||| Sbjct 59963 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGT 59904 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || ||||| | || || |||||||| || Sbjct 59903 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGC 59844 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 59843 TCCAGGTAGATAGC 59830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694335645526880