Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20macaco_20[genbank_20GCA_5F001262655.1_202015-08-06] 26,772 sequences; 2,119,875,225 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2270 165 6e-36 seq1840 138 8e-28 >seq2270 Length=260880 Score = 165 bits (182), Expect = 6e-36 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 || || || || ||||| |||||||| || ||| ||||||||||| |||| || || Sbjct 158779 ACGATCGGGGTGACGCAGGTGCAGCCCACGTCCACCAGCATCTTCTCCAGCCGGAAGGAG 158720 Query 27012 TTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAG 27071 | |||||| | | | || | |||||| || || ||||| || ||||| | ||| ||| Sbjct 158719 TAGGGGCAGTGCTTAGGCTCCCTGCGCAGAACCAGGATCTCCTGCTGGATGGCGACGGAG 158660 Query 27072 TTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCT 27131 |||||||||||||| || ||||| |||||||| || || || | || ||||||| | ||| Sbjct 158659 TTCATGTGGTAGTCCACCTTCCCCTCAGCATTGACGCAGCCCAGGTGGCGACACCTGGCT 158600 Query 27132 TCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||| ||||| ||||| ||||| || | || |||||||| Sbjct 158599 TCCCAGATCACTGAGGGGTATCTCTCAGGGTCCTCATTGCG 158559 Score = 100 bits (110), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233 |||||||||||||| || || |||| |||||||| || || | |||||| | | | ||| Sbjct 157225 TGGAGAGTCCAAGGTGAAGTGGATCGGTTGTAGTAATCGGAGGGCCTTTTGGGATTCGTA 157166 Query 27234 TTCCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTG---TTAGCA 27290 |||| ||| ||||| ||| | | ||| |||||| | | || ||| | ||| | || | Sbjct 157165 TTCCGGTTGAGGATGTTCAGATTGACCTTCACAGTCTGGGGGAAGTTCTTGCCCTCAGTA 157106 Query 27291 GCTAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCTATGCTC 27350 | ||||| ||| |||||| ||||| |||| ||| | | | || | || | ||| Sbjct 157105 TTTGGGCATCCTGGATTTTGTGGGCTTGCTATTCCTGCCATCATTACAGCCTCCAGACTC 157046 Query 27351 AGCAGCAGAAG 27361 |||||||| || Sbjct 157045 AGCAGCAGCAG 157035 >seq1840 Length=865484 Score = 138 bits (152), Expect = 8e-28 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||||||| ||||| Sbjct 122274 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGCTAACTCTGGT 122215 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || ||||||||||| |||||| | | ||| ||||| | ||||||||||| |||||| Sbjct 122214 TGCTCAGTAAGTTTTAAGGCATCACCCAGACTTTTAGCCACAAAATGAGCTCCTTGTGGA 122155 Query 4285 AGCTCC 4290 | ||| Sbjct 122154 GGTTCC 122149 Score = 120 bits (132), Expect = 2e-22 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||||| ||||| |||||||||||| ||||| | ||||||||| ||||| Sbjct 125770 AAGTTTATATTTCTTCGAATCAATTTCTGGAAAAAATGTGTCGCTTTCAAAGTCCTGCAT 125711 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| ||||||||||||||||||| || ||| | | |||| ||||| || Sbjct 125710 GATCCTTGTCACAAACAGTTTAAGATGGCCTGGTTGATTCATGGCTTCCTT 125660 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | || ||||| |||||||||||| | |||||||| || ||||||||||| Sbjct 111645 CTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 111586 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||||| | |||||||||| || Sbjct 111585 AATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 111537 Score = 105 bits (116), Expect = 5e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| |||||| |||||||||||||||||||||||||| | |||||| || || ||| Sbjct 132940 TATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACA 132881 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAA 4056 | ||||||||||| ||| || ||||| ||| Sbjct 132880 TCAGAAAGAACACCTGGGTA-TCTATAAAA 132852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361133329603772