Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20macaco_20[genbank_20GCA_5F001262655.1_202015-08-06] 26,772 sequences; 2,119,875,225 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4120 143 6e-29 seq1547 132 1e-25 seq4565 131 4e-25 seq4509 122 2e-22 seq5791 114 3e-20 seq3055 113 1e-19 seq571 111 4e-19 seq1059 109 1e-18 seq2622 89.7 1e-12 seq194 89.7 1e-12 >seq4120 Length=149214 Score = 143 bits (158), Expect = 6e-29 Identities = 162/212 (76%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA-TA-GAGTTCTACCGTCTTCTA 104411 ||||| | || || || || ||||| || |||||| | || | || || ||||| | Sbjct 17858 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAAAGTACGTGT----CCATCTTCCA 17913 Query 104412 GTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA 104471 |||| || ||||||||||| || || || ||||||||| |||||||| |||||||| | Sbjct 17914 GTTGCTTGCCAGCAAAAATCAGTCT-TGCTGATCAGGA---ATTCCTTCCTTATCCTGGA 17969 Query 104472 TCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTAC 104531 |||| || |||||||||||| ||||| ||||| ||||| || | |||||||| | Sbjct 17970 TCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAGAGCGATAGTCTTCC 18029 Query 104532 CAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | ||||| |||||||| || |||||||| ||| Sbjct 18030 CTGTAAGGGTTTTTACGAAAATCTGCATCTTG 18061 >seq1547 Length=952565 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || |||||||| | ||| || || | ||| ||||| || ||| Sbjct 538294 GTGGACTCCTTTTGAATGTTCTAGTCAGACAAAGTACTTCCATATTCCAGTTGCTTGCCA 538235 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || || ||||||||||| ||| || |||||||| ||||| | ||| Sbjct 538234 GCAAAAATCAATCTTTGCTGATCAGGAGGAATTTTTTGCTTATCCTGGATCTTGACCTTT 538175 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||||||| ||||| ||||| |||| || | | ||||| || ||||| ||| Sbjct 538174 ACATTTTCTGTTGTATCTGAGGGTTCAACCTTGAGAATGGTGGTCTTCCCTGTAAGGGTT 538115 Query 104543 TTTACAAATATCTGCATTTTG 104563 |||| || |||||||| ||| Sbjct 538114 TTTATGAAAATCTGCATCTTG 538094 >seq4565 Length=307966 Score = 131 bits (144), Expect = 4e-25 Identities = 151/203 (74%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || | || || ||||| ||||||||| | || | || ||||| Sbjct 133387 ACAAGATGAAGAGTGGTCTCCTTTTGAATGTTATAGTCAAA----GTACGTCCATCTTCC 133442 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||||||||||| || || || || |||| ||| |||||||| |||||||| Sbjct 133443 AGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGAAGGAATTCCTTCCTTATCCTGG 133502 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| | |||||||||| || ||||| ||||| |||| || || || ||||| Sbjct 133503 ATCTTGGTCTTTACATTTTTTATTGTATCTGAGGGTTCAACCTTGAGAGTGATGGTCTTC 133562 Query 104531 CCAGTAAGTGTTTTTACAAATAT 104553 || ||||| |||||||| || || Sbjct 133563 CCTGTAAGGGTTTTTACGAAAAT 133585 >seq4509 Length=362010 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGT-AGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 || ||||| || || || | |||| ||||| || | ||| || | || | || ||||| Sbjct 164314 ACAAGATGAAAAGTGAGCTCCTTT-TGAATGTTGTGGTCTGACAAAGGACATCCATCTTC 164372 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||| || ||||||||||| || || || |||| |||||| |||||||| |||| | | Sbjct 164373 CAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATAAGGAGGAATTCCTTCCTTATGCGG 164432 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| |||||| | |||| || || || ||||| ||||| | | || ||||| Sbjct 164433 GATCTTGGCTTTTCCTTTTTATATAGTGTCCGAGGGTTCGACCTCAAAAATGATGGTCTT 164492 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| ||||||| || |||||||| ||| Sbjct 164493 CCCCATAAGGGTTTTTATGAAAATCTGCATCTTG 164526 >seq5791 Length=909484 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||||| | || || ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 169679 GGGGAAAGAGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 169620 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||| ||||| |||||||| ||| | ||||| || || ||| | Sbjct 169619 GCTATATTCTGGCTAAAGAAGAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTC 169560 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 169559 ATCAGCAGAGATGAAG 169544 >seq3055 Length=625531 Score = 113 bits (124), Expect = 1e-19 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | | ||||||||| | || || | || ||| | || |||||||| | Sbjct 257285 TGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACTGTGTTTTTCATCCTGAGG 257344 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| || ||| || |||||||||||||| | ||| |||||||| ||| Sbjct 257345 AAGAAAAACAACCAAGTTTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACGTTG 257404 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| || ||||| ||| | ||||| ||||||| Sbjct 257405 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACAAG 257441 >seq571 Length=358238 Score = 111 bits (122), Expect = 4e-19 Identities = 138/185 (75%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || | || || ||||| || || ||| | || | || ||||| Sbjct 307013 ACAAGATGAAGAGTGCACTCCTTTTGAATGTTGTAATCAAA----GTACATCCATCTTCC 307068 Query 104411 AGTTGTTTTCCAGCAAAAA--TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCT 104468 ||||| || |||||||||| |||| || || ||||||||||| |||||||| ||||||| Sbjct 307069 AGTTGCTTGCCAGCAAAAAAATTAGTCTTTGCTGATCAGGAGGAATTCCTTCATTATCCT 307128 Query 104469 GAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTC 104527 | ||||| || ||||||||||||| |||| | ||| ||| |||| || || || ||| Sbjct 307129 GGATCTTAGCCTTTACATTTTCTATTATATC-CAAGGATTCAACCTTGAGAGTGATGGTC 307187 Query 104528 TTACC 104532 || || Sbjct 307188 TTCCC 307192 >seq1059 Length=381652 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || |||| || |||||||| |||| || |||||||| | | | |||||||| Sbjct 245970 TCCTTTTGAACTTTGTAGTCAGACAGAGAATGTCCATCTTCTAGGTTTCTGCCAGCAAAG 246029 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 | || | || ||||||||||| ||| |||| |||||||| ||||| || || | ||| Sbjct 246030 GTCAGTTTTTGCTGATCAGGAGGAATTTCTTCCTTATCCTGGATCTTGGCCTTCATATTG 246089 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 |||| ||||| ||||| || | || || || || || || ||||| | ||||| Sbjct 246090 TCTATTGTATCCAAGGGTTCAACTTTAAGAGTGATGGTTTTCCCTGTAAGAGCTTTTATG 246149 Query 104549 AATATCTGCATTTTG 104563 || |||||||| ||| Sbjct 246150 AAAATCTGCATCTTG 246164 >seq2622 Length=380135 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || ||| | ||||||||||| || ||||| || || || |||| ||| || Sbjct 305819 GCAAAGATCAGTCTCCGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTCTGCCTTG 305760 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || | || ||||| || || || | ||| ||||| || || Sbjct 305759 ACATTCTCAATGGTGTCACTGAGCTCGACCTCAAGGGTGATGGCCTTGCCAGTCAGGGTC 305700 Query 104543 TTTACAAATATCTGCAT 104559 || | ||| |||||||| Sbjct 305699 TTCAAAAAGATCTGCAT 305683 >seq194 Length=1916396 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 226545 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTT 226604 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 226605 GAGAAGAGAGTAGGCGAATATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCT 226664 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 226665 TTTACCTTGGATGCTGACTTCTAA 226688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151003451638576