Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20macaco_20[genbank_20GCA_5F001262655.1_202015-08-06] 26,772 sequences; 2,119,875,225 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq3797 194 2e-44 seq1221 127 3e-24 >seq3797 Length=372581 Score = 194 bits (214), Expect = 2e-44 Identities = 214/285 (75%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| || |||||||| || ||||| |||||||||| || || || | ||| Sbjct 12668 AAGGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATGGAGGCAGTGTTGATGATT 12609 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || || || ||||| || |||||||| | || || || || | Sbjct 12608 TTAAAACCTACTTCGCCACCAAAAGTGCTCGGCTTCCAGTAGTCAGGAGAACATATAGCA 12549 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || | || | ||| | ||||| ||| Sbjct 12548 TTACCCATCAGTCCTTTCAAGGAGAAGGGTGCTCCAACTTCTACCATGGTTTCACCAAAG 12489 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | ||||| || ||||| || | | ||||| ||||| || | ||| || | | Sbjct 12488 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGCCAGGATAGAGCTCCATAGCGTCAATG 12429 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 12428 TCGCCATAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCACCT 12384 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9737 TGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGA 9796 |||| || |||| |||||| || |||||||| || || || || || || |||||||| | Sbjct 11001 TGGTCTGGAACAGCTGCTCATCGCCCCATTCTGGATGCTCCTGCTTAAGCACATCGCACA 10942 Query 9797 CCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAA 9856 | | ||||||||| | |||||| || |||||||||||||| | || ||||| | |||| Sbjct 10941 CTCGGTTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGCCCAGGCACCAGCCCAA 10882 Query 9857 ACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT 9916 | ||||| | ||||| ||||| |||| | || || | ||| | ||| | ||| | Sbjct 10881 AGACTTCCTGTCCCACAGCAAACTGCAGGTGTTCAGGGGTATGGGGGGGATAGATCATCT 10822 Query 9917 GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTGA 9969 |||| || |||||||| ||||| ||||||| ||| || ||||| | |||| Sbjct 10821 CTGCCTGAGTATCTTTGACTGTGGGAGGATACACTTCTCCATCAATTATCTGA 10769 Score = 140 bits (154), Expect = 5e-28 Identities = 137/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | || Sbjct 9850 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 9791 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || |||||||| || | || || || ||||||| || |||||||||||||| Sbjct 9790 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 9731 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | |||| | || || ||| |||||||||| | ||||||| || || Sbjct 9730 AGGGATGAACTTTCTCCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 9674 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| |||||||| || || ||||| || | ||| ||| Sbjct 8957 TCACCTTTCACACCCATGGGAGTTGGGCAGTCTTCAGCCACAGGAGGAAGGGCTCTGGTA 8898 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || |||||||||||||| ||||||||||| | | || || Sbjct 8897 TAATAGGAGAGGTTAGAGAATGCTTCCCAGCTTTTGTAGCCATAGTGCATATTATAAGTT 8838 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | ||| |||||| Sbjct 8837 GGTGGACTATCAATCAAATGGGATCTGGCT 8808 Score = 102 bits (112), Expect = 1e-16 Identities = 197/289 (68%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| ||| | ||||| |||||||| || |||| | ||| || | | || || Sbjct 11599 CCAGCAATTTGTTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCCAGTAGTATA 11540 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| || || | | || | || |||| | || Sbjct 11539 GAGTTGTTGTAGAGAAACTGTTGATAGTTGTATTCCTGATCCTCAATCTGAAAGGCGTCG 11480 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| | ||||| || || ||||| || || || |||||||||||| Sbjct 11479 GGCAGAAGGGGATGCCAGTGATAGAGTGTGTTAAACTCAGCAGCGATGCGGTTCTGGTAC 11420 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | |||| |||||| || || | Sbjct 11419 TGGAATTGTTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGCTTGAAGTGATAGCCAC 11362 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | | ||||| || || | | || | ||| ||||| || || || || Sbjct 11361 TCAAGTGCTGTACGTAGTCTTCAATCACAATCTTAATAGTCTCTCCTGT 11313 >seq1221 Length=1091226 Score = 127 bits (140), Expect = 3e-24 Identities = 179/249 (72%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || | ||||| || ||| || ||||| || ||||| || ||||||||| Sbjct 781126 GTGGCCGTCTTGATGATGTTAAACCCTGTCTCACCGCCAAATGTGCTTGGCTTCCAGTAC 781185 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | |||||||||||| ||| | | ||| ||||| | |||||| |||||||| | ||| Sbjct 781186 TCTGGGGAGCAGATGGGATTCCCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTCT 781245 Query 9053 ATGATGCTCTCACCGAAGAT-GGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTA 9111 || || ||||| || ||||| | ||| | || ||||| | | || || | ||| Sbjct 781246 ATCATACTCTCCCCAAAGATAGAGTTCGGTAGGC-ACTTTTCAAGAAGCAACCCTGGGTA 781304 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | || |||| ||| || || || | |||||||| || || ||||||||||| Sbjct 781305 GAATTCCAAGGCATCGATGTCTCCGTACAGCTCCTCCAACTCTGCTGCCATCTCCTTCTC 781364 Query 9172 ACCTACAAG 9180 ||| |||| Sbjct 781365 TCCTGCAAG 781373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723485804424800