Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20macaco_20[genbank_20GCA_5F001262655.1_202015-08-06] 26,772 sequences; 2,119,875,225 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3856 176 3e-38 seq4009 143 2e-28 seq4010 131 1e-24 seq564 129 4e-24 seq4565 86.0 4e-11 >seq3856 Length=326664 Score = 176 bits (194), Expect = 3e-38 Identities = 368/540 (68%), Gaps = 9/540 (2%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||||| |||| | || || || ||| ||||| | ||| | || ||| || Sbjct 123621 TGCAGTTGGTACTGATCTTGGCACCACCTACTCTTGTGAGGGTGTCTTCCAGCATGAAAA 123562 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 |||||| | |||||||||||| || || || | || || ||| || || | ||||| Sbjct 123561 AGTAGAGACAATTGCCAATGATCAGGGAAACTGCACCACTCCAAGCTACATTGCCTTTAC 123502 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 | | || ||| | ||||| |||||||| || |||||| |||| || || || Sbjct 123501 TAATACCAAACGATTGATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAACCCCACCAA 123442 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || |||||||||| ||| ||||| | | | ||||||||| | ||| | || Sbjct 123441 CACGTTTTTTGATGCCAAACATCTGATTAGATGCAGATTTGATGATGCTGTTGTGTAGTC 123382 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAA-ACCATATATAGAAG 474626 ||||||| |||||||| ||| |||| | |||| || || || || | | ||| Sbjct 123381 TGATATGAAGCATTGGCCCTTTGTGGTGGTGAATGGTGCAGGCAAGGCCCAAGGTCCAAG 123322 Query 474627 --CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684 |||||| | || || || ||| || | || || | | || || |||||| | Sbjct 123321 TAGAATACAAG--GGAGAGACAAAAAGTTTCTATCCTGAGGAGGTGTCATCTATGGTTCT 123264 Query 474685 AGCCAAAATGAAACAAACCGCGAGCT-CATATCTTGGACAAGA-AGTAACTGATGCAGTA 474742 | || ||||| |||| | ||| | | ||||||||| |||| || || ||| || Sbjct 123263 GACAAAGATGAAGGAAACTG-GAGATGCCTATCTTGGA-AAGACTGTTACCATTGCTGTG 123206 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 | || || ||||| || |||||||| ||||| | ||| || || ||||||| |||| Sbjct 123205 GTCACAGTGCCAGCTTACTTTAATGACTCTCAGCATCAGGCTACCAAAGATGATGGAACC 123146 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| ||||||||||| | | ||||| ||||||||||| || | || ||||||| Sbjct 123145 ATTGCTAGTCTTAATGTTCTTAGGATTATAAATGAACCAACTGCTACTGCTACTGCTTAT 123086 Score = 127 bits (140), Expect = 1e-23 Identities = 438/681 (64%), Gaps = 8/681 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||||| || |||| |||| ||||| || | | | | ||| || Sbjct 122842 ACTGCTTGTGAACATGTTAAGTATACTCTGTCTTCCAGCACCAAGGCCAGTATTGTGATT 122783 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| |||| ||||||||| || | || | | ||| | || |||||||||| Sbjct 122782 GATTCACTTTATGAAGGAATAGACTTCCATGCCTCCACTACCTGTGCCCAATTTGAAGAA 122723 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 || | ||||||| || | || | || || || || ||| || |||| Sbjct 122722 TTTAATGCTGATCTGTTCCGTGGCACCCTAGACCCTGTAGAGGAAGCCCTTCAAGATGTC 122663 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||| ||||| | ||||| ||||| || || || ||| || | || || Sbjct 122662 AAACTAGACAAGTCACAGATTCATGACATTGTCCTGGTTGGTAGTTTTACCTGTATCCCC 122603 Query 475736 AAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAAT 475795 || || | | | || | | | || ||||| ||| | | | | | ||| | || Sbjct 122602 AAGATTCAAAAGCTTCTGTAAGACTTCTTCAATGGAAAACAACTGAGTAAGAGTATCAAC 122543 Query 475796 CCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATC---AGGTCAA 475852 |||||||| ||| |||| |||| || |||||||||| || || | || || || Sbjct 122542 CCTGATGAGGCTTTTGCTTATGCTGCAGCTGTCCAAGTGGCCATCCTGTCTGAAGAGAAA 122483 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 || ||||| | | || | |||| | || || ||||| ||||| | ||| || Sbjct 122482 TC---TGAGAATGTTCAAGATTTGCTACTCTTGGATGTCACTCCTCTTTCTCTTGGTATT 122426 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 ||||| | ||| || |||||||| || ||| | | | ||| | || || ||| Sbjct 122425 GAAACTGCTGGTGGAGTTATGACTGCACTCATTAAGTGCGACACTACCATTCCTACCAAG 122366 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032 | || | || | || || ||||| || || | ||| ||| || | | Sbjct 122365 CAGACATAGACCTTCACTACCTACTCTGACAACCAGCCTGGTGTGCTCATTCAGGTTTAC 122306 Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||||||| | || || ||||| ||| ||||| | ||| | || ||| Sbjct 122305 GAAGGTGAATGGGTCAGGACCAAGGATAACAACTTGCTTGGCAAGTTTGAACTCACAGGC 122246 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 || ||||||| ||| | || |||||||| ||||||| ||||| |||||||||| ||| Sbjct 122245 ATACCTCCTG--CCCTGTGGTGTTCCTCATGTTGAAGTCACTTTCAATATTGATGCCAAT 122188 Query 476153 GGTATTCTTAATGTTACTGCT 476173 || ||||| ||||| ||||| Sbjct 122187 GGCATTCTCAATGTCTCTGCT 122167 >seq4009 Length=239670 Score = 143 bits (158), Expect = 2e-28 Identities = 364/551 (66%), Gaps = 2/551 (0%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| || || || || || || || || || ||| || || | || | || | | Sbjct 172831 GAATGGCCATAGGCATCGACTTGGGCACCACCTACTCGTGCGTGGGGGTGTTCCAGCACG 172890 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | || || || || |||||||||||||| || || | || || || || || | | Sbjct 172891 GCAAGGTGGAGATCATTGCCAATGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCCT 172950 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 |||| || || ||| || ||||||||||| || || | || | || ||||| Sbjct 172951 TTACAGACACAGAAAGGCTCATTGGAGATGCCGCCAAGAACCAGGTAGCCATGAATCCCC 173010 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || ||| | |||||||| ||| | ||||||| | || ||| ||||| | ||| | Sbjct 173011 AGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTTGTGC 173070 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 |||| |||||| | |||||||||| | ||||| |||| || || ||||| | | Sbjct 173071 AATCAGATATGAAACTTTGGCCTTTTCAAGTGATCAATGAAGGAGGAAAACCGAAGGTGC 173130 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | || ||| || | |||| || | || || |||| ||||| ||||| Sbjct 173131 TCGTGTCCTACAAAGGGGAGAATAAAGCTTTCTACCCTGAGGAAATCTCTTCGATGGTAC 173190 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 | | || ||||| | || || ||| | | | | || | || || |||| || Sbjct 173191 TGACTAAGATGAAGGAGACTGCTGAG-GCTTTTTTGGGCTACCCTGTCACGAATGCTGTG 173249 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 || || || ||||| ||||| ||||| |||||||| || || || || ||||| || Sbjct 173250 ATCACAGTGCCAGCCTATTTCAATGACTCTCAACGGCAGGCTACAAAGGATGCAGGTGTG 173309 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| || || ||||| || | || || |||||||| ||||| || || |||| || Sbjct 173310 ATTGCGGGACTCAATGTGCTAAGAATCATCAATGAACCCACAGCTGCTGCCATTGCCTAC 173369 Query 474863 GGTCTTGATAA 474873 ||| | ||||| Sbjct 173370 GGTTTAGATAA 173380 >seq4010 Length=428235 Score = 131 bits (144), Expect = 1e-24 Identities = 363/546 (66%), Gaps = 17/546 (3%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATT-TAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTA 474386 |||||||| |||| ||| | || || ||||| |||||| ||| | || |||| | Sbjct 200248 TGCAATTGTTATTAATTCTTGGTACCACTTAGTCTTGTGTGAATGTCTTCTAACATGGAA 200189 Query 474387 AAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATC----ATATGTTTCT 474442 ||||||| |||||||||||||| || || || |||| | | | | | || | Sbjct 200188 AAGTAGAGATAATTGCCAATGATCAGGGAAACTGAACCCCTCAAGCTAGTAAGTGCTGTC 200129 Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502 |||||||| || || | ||||| |||||||| || |||||| |||| || ||| Sbjct 200128 TTTACTGATACCAAATGATTCATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAACCCT 200069 Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562 | | | |||||||| ||| ||| |||| | | ||||||||| |||| Sbjct 200068 ACCACAATGGTGTTTGATGCCAAACATCTGACTGGTTGCAGATTTGATGAT---GTTGTC 200012 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 || ||||| ||| |||||||| | | | || | | || || | | || | | Sbjct 200011 CAGTCTGACATGAAGCATTGGCCCCTCATGCTGGTGAGTGATGCCAGCAGGCCCAAGGTC 199952 Query 474623 GAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAA-ATTTCTTCAATGGT 474681 ||| | | || ||| || || ||| | || | | |||| || || || ||||| Sbjct 199951 CAAGTAGAATACAAAGGAGAGAC-AAAAAGGTTCTATCAACACAAGATGTCATCTATGGT 199893 Query 474682 TTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAA-GTAACTGATGC 474738 ||| | |||||||| ||| | | | || ||| |||| ||||| || || |||| Sbjct 199892 TTTGACAAAAATGAAGGAAATCACAGAAACTTGTAT-TTGG--AAGAATGTCACCAATGC 199836 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || | | | ||||| || |||||||||||||| | ||| || | |||||||| || Sbjct 199835 TGTGGTCATAGCACCAGCTTACTTTAATGATTCTCACCATCAGGCTAGCAAAGATGCTGG 199776 Query 474799 AA-GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 || | |||| ||||| ||||| | | ||||| ||||| ||||| || | || ||| Sbjct 199775 AACCATTTGCTGGTCTCAATGTATATAGGATTATCAATGAGCCAACTGCTTCTGCTATTG 199716 Query 474858 CTTATG 474863 |||||| Sbjct 199715 CTTATG 199710 >seq564 Length=630068 Score = 129 bits (142), Expect = 4e-24 Identities = 310/462 (67%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 |||||||||||| |||| | ||||| ||||| ||||| || || | || | ||| | Sbjct 526244 ACAGCTGGAGATACACACTTAGGTGGAGAAGACTTTGACAACCGAATGGTCAACCAT--T 526301 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTTCAACATCTGCTAAAGCATT 475482 | ||| || |||||| | || |||| || ||| | | || | | ||| | Sbjct 526302 TTATTGCCGAGTTCAAGCGCAAGCATAAGAAGGACATCAGTGAGAATAAG--AGAGCTGT 526359 Query 475483 AAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAAC 475542 |||| || | ||||||||||||||||||||||| |||| ||||| || || | Sbjct 526360 CCGACGCCTCCGTACTGCTTGTGAACGTGCTAAGCGTACTCTATCTTCCAGCACCCAGGC 526419 Query 475543 TACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGC 475602 | | |||| ||||||| |||| ||||||||| || | |||| ||||| | || Sbjct 526420 CAGTATTGAGATTGATTCACTTTATGAAGGAATCGACTTCTATACCTCCATTACCCGTGC 526479 Query 475603 TAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT 475662 ||||||||| | | ||||||| || | || | || || || || ||| Sbjct 526480 CCGATTTGAAGAACTGAATGCTGATCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGC 526539 Query 475663 TCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTC 475722 || ||||| | ||||| ||||| ||||| ||||||| || || || || || ||||| Sbjct 526540 CCTTCGAGATGCCAAACTAGACAAGTCACAGATCCATGATATCGTCCTGGTTGGTGGTTC 526599 Query 475723 AACAAGAATTCCAAAAATAAGAGAAATGCT--TTCATCA-TATTTTAATGGTAAAAAGTT 475779 || | ||||| || || ||| ||| | || | | || ||||| || | | Sbjct 526600 TACCCGCATTCCCAAGAT---TCAAAAGCTTCTGCAAGACTTCTTCAATGGAAAGGAACT 526656 Query 475780 AAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 ||| | ||| | || |||||||| |||||||| ||||| || Sbjct 526657 GAATAAGAGTATCAACCCTGATGAGGCTGTTGCTTATGGTGC 526698 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || ||||| || |||||||| ||||| ||||| || || ||||||| Sbjct 525923 ATGCTGTGGTCACAGTGCCAGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATG 525982 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| ||||| |||||| | | ||||| ||||||||||| || || || Sbjct 525983 CTGGAACCATTGCTGGTCTCAATGTTCTTAGGATTATAAATGAACCAACTGCTGCTGCTA 526042 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| || || || || Sbjct 526043 TTGCTTATGGCCTAGACAAAAA 526064 Score = 111 bits (122), Expect = 1e-18 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||||||||||| | || || || ||| |||||| | ||| | || |||| || Sbjct 524901 TGCAGTTGGTATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCATGGAAA 524960 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||||| |||||||||||||| || || || |||| || ||| |||||| | ||||| Sbjct 524961 GGTAGAGATAATTGCCAATGATCAGGGAAACCGAACCACTCCAAGCTATGTTGCCTTTAC 525020 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501 ||| || |||| | || || |||||||| || |||||| |||| ||||| Sbjct 525021 TGATACCGAACGATTGATCGGTGATGCTGCGAAGAATCAAGTTGCAATGAATCC 525074 Score = 107 bits (118), Expect = 1e-17 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||||||| | | ||||| ||||| ||| ||||| | ||| | || ||| Sbjct 527369 GAAGGTGAACGTGCCATGACTAAGGATAACAACTTGCTTGGCAAGTTTGAACTCACAGGC 527428 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 || |||||||| ||| | || |||||||| |||||||| ||||||||||||||||| ||| Sbjct 527429 ATACCTCCTGCCCCCCGGGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAAT 527488 Query 476153 GGTATTCTTAATGT 476166 || ||||||||||| Sbjct 527489 GGCATTCTTAATGT 527502 >seq4565 Length=307966 Score = 86.0 bits (94), Expect = 4e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| ||||||||||| || | ||| || |||| ||||||||||||||| Sbjct 133436 ATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGAAGGAATTCCTTCCTT 133495 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| || || ||||| | | || | | || || || Sbjct 133496 ATCCTGGATCTTGGTCTTTACATTTTTTATTGTATCTGAGGGTTCAACCTTGAGAGTGAT 133555 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAAT 480766 || || || || || || || |||||||| Sbjct 133556 GGTCTTCCCTGTAAGGGTTTTTACGAAAAT 133585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267030819022256