Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20macaco_20[genbank_20GCA_5F001262655.1_202015-08-06] 26,772 sequences; 2,119,875,225 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1113 141 7e-29 seq194 113 4e-20 seq8087 102 6e-17 seq1388 89.7 4e-13 seq5791 86.0 5e-12 >seq1113 Length=287687 Score = 141 bits (156), Expect = 7e-29 Identities = 272/392 (69%), Gaps = 7/392 (2%) Strand=Plus/Minus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | || ||||||||| | ||| | ||| | || ||| | | Sbjct 274839 CAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGATTATATAAGAAAACTGGTAAACTGGT 274780 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 |||||| || || || ||||| |||||||| |||| || |||||||| ||| | | | Sbjct 274779 ATTTCTTGGATTGGATAATGCGGGAAAAACAACATTGCTACACATGCTAAAAGATGACAG 274720 Query 47320 CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCAT 47379 | | | || ||| ||||||||||| || || ||| |||| || ||||||||||| Sbjct 274719 ACTTGGACAACACGTCCCAACATTACATCCCACTTCAGAAGAACTGACCATTGCTGGCAT 274660 Query 47380 AACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTA 47439 || |||| || |||||| | || ||||| ||||||| || ||| ||||| |||| || Sbjct 274659 GACTTTTACAACTTTTGATCTGGGTGGACATGTTCAAGCTCGAAGAGTGTGGAAAAACTA 274600 Query 47440 TTTTCATGTCGTTGATGCTATAGTTTATATTGTAGACTGTGCAGA-TTTGACTAGACTGA 47498 || || | ||| || || | | | || || |||||||| ||| || |||| Sbjct 274599 CCTTGCTGCTATCAATGGCATTGTATTTTTGGTGGATTGTGCAGACCATGA-AAGGCTGA 274541 Query 47499 CAGAGGCAAAAATCGAATTCGATGCGTTGTTAAACGATG-AACTGTTACACGATGTTCCT 47557 |||| ||||| ||| | ||| | | | | |||| ||| || | |||| ||| Sbjct 274540 TAGAGTCAAAAGAAGAACTTGATTCACTAATGACAGATGAAACCATTGC-TAATGTGCCT 274482 Query 47558 AT-TTTAGTGTTGGGCAATAAAATCGACAAAC 47588 || | | | ||||| ||||| ||||||| || Sbjct 274481 ATACTGATTCTTGGG-AATAAGATCGACAGAC 274451 >seq194 Length=1916396 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 223259 CAAGAAGTTCAGATTA-CAGAAGCTCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 223317 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || ||||| ||||| |||||| Sbjct 223318 CATACATTCTGAAATGTATAGTCTCCTTATTGATACTTACATTAAAGAT 223366 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 225049 GGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 225108 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| ||||||| || | || ||||| ||||| | Sbjct 225109 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTT 225168 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 225169 ATTAGCAGAGATGA 225182 >seq8087 Length=159570 Score = 102 bits (112), Expect = 6e-17 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || ||||| | | || ||||| ||||| || ||||| |||| Sbjct 147034 TGATGGCGCTGCCTCCGTGTCACGCGCTCTGCCAGTTCTACGTGGTGAACGGTGAGCTGT 146975 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || | || || |||||||| || || || ||||| ||||| || | Sbjct 146974 CCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCGTGCCGTTCAACATCGCCA 146915 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 | || || ||||||||||| ||||| |||||| | ||| | |||| Sbjct 146914 GCTACGCCCTGCTCACGTACATGATCGCACACATCACCGGTCTAAA 146869 >seq1388 Length=553042 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 43839 TTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGG 43898 |||| || | ||| |||| || ||||| || ||| |||| | ||| ||||| || | | Sbjct 274403 TTATGTCGTGTGTTCTGGCTTTCTTTGCAGCAAGCAACGGCAGAGTAAATGACAACTGAG 274462 Query 43899 TTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAA 43957 | || ||| ||||| ||||| ||||| |||||| | ||||| ||||| || ||| Sbjct 274463 TGGAGCGTTTTAGCCAAGACGTTCAGATTAC-AGAAGCCCACTGTTTCTATGGCTTCCAA 274521 Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 |||||||| |||| || ||||| || ||||| ||| Sbjct 274522 ATTGCCATGTAAAACATACATTCTGAGATGTATAGT 274557 >seq5791 Length=909484 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| ||| |||| |||||||| || ||||| | Sbjct 163260 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTGCAAGGAAAAACAAATTTCTTTGAGA 163201 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| || ||||| Sbjct 163200 AACGAGTTTCAGAGTACCAGCG 163179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397326316565860