Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20macaco_20[genbank_20GCA_5F001262655.1_202015-08-06] 26,772 sequences; 2,119,875,225 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6389 95.1 8e-15 seq4509 87.8 1e-12 seq4120 86.0 4e-12 >seq6389 Length=1055299 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 902070 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 902011 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | | ||||| || || | || || || | Sbjct 902010 CGACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAGGGCATCCCCCCTGACC 901952 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || |||||||| || || |||||||| | ||||| | ||| |||| Sbjct 901951 AGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 901892 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 901891 ACATCCAGAAAGAGTCCAC 901873 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 901841 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 901782 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | | ||||| || || | || || ||||| Sbjct 901781 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAGGGCATCCCCCCTGATCA 901723 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || |||||||| | ||||| || ||| ||||| Sbjct 901722 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAA 901663 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 901662 CATCCAGAAAGAGTCCAC 901645 >seq4509 Length=362010 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | |||||||| | ||| || || |||| | | || || || || Sbjct 164525 AAGATGCAGATTTTCATAAAAACCCTTATGGGGAAGACCATCATTTTTGAGGTCGAACCC 164466 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | ||| | |||| || || | | || ||||| | || || || Sbjct 164465 TCGGACACTATATAAAAAGGAAAAGCCAAGATCCCGCATAAGGAAGGAATTCCTCCTTAT 164406 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | | | |||| || || Sbjct 164405 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGTCCTTTGTCAGACCAC 164346 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||| ||| || ||| | || || || Sbjct 164345 AACATTCAAAAGGAGCTCACTTTTCATCTTGTGTTGAG 164308 >seq4120 Length=149214 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 10/202 (5%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || || || || ||| ||||||| || || || Sbjct 18060 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCGCTCTCGAGGTCGAACCC 18001 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || |||| |||| || || || || ||||| | || ||| Sbjct 18000 TCGGATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGG---AATTCCTGAT 17944 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATT 23785 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || | Sbjct 17943 CAGCA-AGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACACGTACTTT----GACT 17889 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| ||||| |||||||| Sbjct 17888 ACAACATTCAAAAGGAGTCCAC 17867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337899312960176