Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq260 154 2e-32 seq37793 96.9 4e-15 seq3013 96.9 4e-15 >seq260 Length=805401 Score = 154 bits (170), Expect = 2e-32 Identities = 547/844 (65%), Gaps = 17/844 (2%) Strand=Plus/Plus Query 16702 AAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CT 16759 ||||||||| || || ||||| || ||||||||||| || ||||| ||||||| || || Sbjct 242608 AAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAAGGGATTAGCTACTCT 242667 Query 16760 GAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATAT 16819 ||||| || | | |||||||| | || || || | || | || || || Sbjct 242668 GAAAACCTTGCTAA--AACCCAGTTCCAGCCTAAACCTTTCTTCCACGACTTAAATGTAG 242725 Query 16820 TGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAAT 16879 || |||||| | ||||||| || || || || || | || ||| | | || Sbjct 242726 TGCTTCATTAAGGTGAAGTTCATCCCAATGAGCTTCACAGGCAAGGCCTCCCTAAGGAAC 242785 Query 16880 CGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAGCAACTCGTTCCTCGGACGGTGT 16938 || ||||| | || | |||| || || || ||| | ||| || | | | Sbjct 242786 TCCTGTTCTATCCTTGCAGCATTGGTAATTATTTCTTTCA-CTCTCTGCTCTGATGTTTT 242844 Query 16939 ATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCT 16998 ||| || ||||| ||| | || || || | || || || || ||||| ||||||| Sbjct 242845 GTGTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGC- 242903 Query 16999 GATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058 |||||||| || ||||| || | || |||| | ||||| |||||| | ||| ||||| Sbjct 242904 -ATAAGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATAT 242962 Query 17059 CGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118 | || | || ||||||||||| || | || || | ||| | | | | | ||| Sbjct 242963 TGATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACATTC 243022 Query 17119 GGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTAT 17178 | || || || ||||||| | |||||| | | ||| || ||| | ||| | Sbjct 243023 TACATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTTGAA 243082 Query 17179 GCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATA 17236 ||| ||||| |||| ||||| || | | || ||| |||| || | | | || Sbjct 243083 ACAAGCCATCATTTCAATGGCATTGAAGAGAAATTCCCTTT---CTTTGGAATTTTAATG 243139 Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296 || |||| || || || || ||||| || ||| |||| |||||||| || || || Sbjct 243140 TAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAG 243199 Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTT 17356 || || || || | |||||| | || ||| || | | ||||| | | | | |||| Sbjct 243200 CCATAGAAACAGCAGGCTTCTGTAATCTGACTTTTCTGGCTAAATCGCTTCACCAAATTT 243259 Query 17357 TCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCC--AATATATGCTTAATGAAATATT 17414 | || || ||||| || ||| | || || || ||| || ||| | | | |||||| Sbjct 243260 TTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAGAACATAGGAT--GTAAAATATC 243317 Query 17415 TTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGG 17474 | || || ||| | | | ||||| || || ||| | | |||||| | |||| Sbjct 243318 TCTCCTCAGGTTTCAAGCCTTCCCAGTGCTGAGTGTCCTTGTAAAGATCCACCACCTCGG 243377 Query 17475 GGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGG 17534 | |||||| ||| | || || |||||||| | ||||||||||| | || | || | Sbjct 243378 CTGACCAAAAGGAAGCTTCGGCTTTCTTATACATTTGCCAAATATCATAGAATGGAATAG 243437 Query 17535 GGAA 17538 | || Sbjct 243438 GAAA 243441 >seq37793 Length=6272 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || |||||||| | || |||||| ||||||||||| Sbjct 4349 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 4408 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | ||||| | Sbjct 4409 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 4468 Query 17106 C 17106 | Sbjct 4469 C 4469 >seq3013 Length=259453 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || |||||||| | || |||||| ||||||||||| Sbjct 181822 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 181881 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | ||||| | Sbjct 181882 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 181941 Query 17106 C 17106 | Sbjct 181942 C 181942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516384266489520