Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq260 179 4e-40 seq1401 120 3e-22 seq37793 93.3 4e-14 seq3013 93.3 4e-14 >seq260 Length=805401 Score = 179 bits (198), Expect = 4e-40 Identities = 562/855 (66%), Gaps = 29/855 (3%) Strand=Plus/Plus Query 15941 AAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTG 15998 |||||||| || || |||| || ||||| |||||||| ||||||||||||| || ||| Sbjct 242609 AAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAAGGGATTAGCTACTCTG 242668 Query 15999 AAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATT 16058 |||| ||| | ||||||||| || || ||| | || | || || || | Sbjct 242669 AAAAC--CTTGCTAAAACCCAGTTCCAGCCTAAACCTTTCTTCCACGACTTAAATGTAGT 242726 Query 16059 GACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATT 16118 | ||||||| | | || || || || || || || | || | | | || | Sbjct 242727 GCTTCATTAAGGTGAAGTTCATCCCAATGAGCTTCACAGGCAAGGCCTCCCTAAGGAACT 242786 Query 16119 GTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTAT 16178 ||||||||| | || | |||| || || | ||| || || ||| | Sbjct 242787 CCTGTTCTATCCTTGCAGCATTGGTAATTATTTCTTTCACTCTCTGCTCTGA---TGTTT 242843 Query 16179 GGTTTAG---GTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGC 16235 || ||| |||||| ||| |||| || || |||| || || | || || ||||||| Sbjct 242844 TGTGTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGC 242903 Query 16236 TGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATA 16295 |||||||| ||||||||||| | || |||| ||||| |||||| | |||||||| Sbjct 242904 --ATAAGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATA 242961 Query 16296 TCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT--AAT-C 16352 | | ||| | || || |||||||| || | || || |||| || | || ||| | Sbjct 242962 TTGATGCAGAAGAACCAGAAAAGAAGATTGCTTCCAC---TGCAGCAGAGGTTACAATAC 243018 Query 16353 GTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTT 16412 ||| | || ||||| ||||| | | |||||| | | ||| || ||| | | Sbjct 243019 ATTCTACATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCT 243078 Query 16413 TTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGAT 16470 | | |||| ||||| |||| ||||| || | | || ||| |||| | |||| | | Sbjct 243079 TGAAACAAGCCATCATTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATTT---T 243135 Query 16471 TATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTG 16530 || || ||||||| || |||| || ||||| || ||| |||| || ||||| || || Sbjct 243136 AATGTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTG 243195 Query 16531 AAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAG 16590 || |||||||| || | || || | || || || | | |||||| | | ||| Sbjct 243196 GAAGCCATAGAAACAGCAGGCTTCTGTAATCTGACTTTTCTGGCTAAATCGCTTCACCAA 243255 Query 16591 GTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAA 16648 || | ||| || || || ||||| | ||||| || ||| || || | | | ||| Sbjct 243256 ATTTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAGAACATAGGAT--GTAAAA 243313 Query 16649 TATTTTTCGTCAGATGT-AAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTC 16707 ||| | || |||| | | ||| | | ||| | | || ||| | | |||||| | Sbjct 243314 TATCTCTCCTCAGGTTTCAAGCCT-TCCCAGTGCTGAGTGTCCTTGTAAAGATCCACCAC 243372 Query 16708 TTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTG 16767 || | | ||||||| ||| | || || |||||||||| ||||||||||| | || | Sbjct 243373 CTCGGCTGACCAAAAGGAAGCTTCGGCTTTCTTATACATTTGCCAAATATCATAGAATGG 243432 Query 16768 TATGGGAAATACGAC 16782 || ||||| | ||| Sbjct 243433 AATAGGAAAGATGAC 243447 >seq1401 Length=405806 Score = 120 bits (132), Expect = 3e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| ||||| |||| Sbjct 92090 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGTCCTCTCTTCT 92149 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || ||||||| ||||| | Sbjct 92150 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 92209 Query 16344 C 16344 | Sbjct 92210 C 92210 >seq37793 Length=6272 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 4351 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 4410 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 4411 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 4469 >seq3013 Length=259453 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 181824 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 181883 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 181884 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 181942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510266824442480