Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq8862 185 7e-42 >seq8862 Length=84653 Score = 185 bits (204), Expect = 7e-42 Identities = 358/524 (68%), Gaps = 6/524 (1%) Strand=Plus/Minus Query 18823 GACATTTTGGAGCGGAATATAAAGACTGTCAAT-CAAACTATTTACAGCAAGGAATCGAT 18881 || |||| || || ||||| ||||| | | ||| || | | || | ||||| | || Sbjct 49130 GAGATTTNGGGGCAGAATACAAAGA-TATGAATTCAGATTGTTCAGGTAAAGGAGTAGAC 49072 Query 18882 CAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATA 18941 |||||||||| || || || || || ||||| || ||||| | || |||| || || Sbjct 49071 CAGCTGCAAAAAGTGATTGACACCATCAAAACCAATCCAGACGACAGAAGAATCATCATG 49012 Query 18942 TCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGT 19001 | ||||||||||||| ||| |||| | |||| || ||||| ||||| | | || Sbjct 49011 TATGCTTGGAATCCAAAAGATCTCCCTCTGATGGCGCTGCCTCCGTGTCATGCCCTCTGC 48952 Query 19002 CAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATG 19061 ||| | ||| | | |||||||| | |||||||| | ||||||| || || || ||| Sbjct 48951 CAGCTCTACATAGTGAACGGTGAGCTGTCCTGCCAGCTGCACCAGAGGTCAGGAGACATG 48892 Query 19062 GGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCAT 19121 ||||| || || || |||||||| | | |||||||| || || ||||| | ||||| Sbjct 48891 GGCCTGGGCGTGCCTTTCAACATCACCAGCTATGCACTGCTCACGTACATGATCGCGCA- 48833 Query 19122 GTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTG 19181 | || || || | | || || || | |||| |||| ||||||||||||||| || Sbjct 48832 CTCACGGGCCTGCAGCCAGGTGACTTTGTACATAATTTGGGAGATGCACATATTTACCTG 48773 Query 19182 AATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTT 19241 | ||| || || | ||| | ||||| ||| ||| |||||| || || Sbjct 48772 ACTCACATTGAGCGGCTGAAAATTCAGCTTCAGCGAGAACCAGGACCTTTCCCGAAGCTC 48713 Query 19242 AAAATTATTCGAAATGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGAT 19301 ||||| ||||||| || || | | || || ||| || || ||||| |||| Sbjct 48712 AAAATCCTTCGAAAAGT---TGAGACAGTTGATTTCAAAGCTGAAGACTTTCATATTGAA 48656 Query 19302 GGATATAATCCACAccccccccTAAAAATGGAAATGGCTCTTTA 19345 || || |||| ||||| | ||||||||||||||| |||| Sbjct 48655 GGGTACGATCCTCACCCAGGGATCAAAATGGAAATGGCTGTTTA 48612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398629954412130