Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq5616 163 2e-35 seq255 125 5e-24 seq8862 102 6e-17 >seq5616 Length=151007 Score = 163 bits (180), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| |||| | || | | | |||||||| || || || |||||||| || | ||| | | Sbjct 59218 AGCTCTTAGGCCACGTGGCGGACAATGGGGGTGACACAGGTGCAGCCCACGGCCACCAAC 59277 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || | |||||| | || || | | |||| || || ||| Sbjct 59278 ATCTTCTCGAGCCGGAAGGAGTGGGGGCAGTGCTGGGGCTCCCTTCGCAGGACCAGGATC 59337 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| || || ||||| ||||||||||||||||| || ||||| |||||||| | || Sbjct 59338 TCTTGCTGAATGGGGACCGAGTTCATGTGGTAGTCCACCTTCCCCTCAGCATTGATGCAG 59397 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || |||| ||| ||||| || ||||| ||||| ||||| || || || | || || ||| Sbjct 59398 CCCAAGTGGCGGCACTTGGCCTCCCAGATCACGGAGGGGTACCTCTCAGGGTCCTCGTTG 59457 Query 27171 C-GNTGGAG 27178 | | ||||| Sbjct 59458 CGGCTGGAG 59466 Score = 82.4 bits (90), Expect = 6e-11 Identities = 133/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233 |||||| ||||||| || || |||| |||||||| ||||| | |||| | ||| | ||| Sbjct 60690 TGGAGATTCCAAGGCGAAGTGGATCGGTTGTAGTAATCTGAGGGCCTTCTGGAATTTGTA 60749 Query 27234 TTCCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTGTTAGCAGC- 27292 |||| |||| |||| ||| | | ||| ||||| | || ||| | ||||| ||| Sbjct 60750 TTCCGGTTAAAGATGTTCAGATTGACCTTCACACTTTGGGGGAAGTTCTTGTTCCCAGTA 60809 Query 27293 --TAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCTATGCTC 27350 | ||| ||| |||||| ||| |||| ||| ||| ||| || | | ||| Sbjct 60810 TTTGGACATTCTGGATTTTGTGGAATTGCTATTCCTGCCTTCACTGTAACCACCAGACTC 60869 Query 27351 AGCAGCAGAAG 27361 |||||||| || Sbjct 60870 AGCAGCAGCAG 60880 >seq255 Length=811203 Score = 125 bits (138), Expect = 5e-24 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| |||||||| || ||||||||||| Sbjct 747895 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTGTTCTTTAAAGGTCGATTCTTCTCAGG 747836 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| ||||||||||||||| Sbjct 747835 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTATCT 747787 Score = 118 bits (130), Expect = 8e-22 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||||||| || || Sbjct 753610 TTATAAACAGAACTGCCTCCTACTATCCAAACCATGTCTACTTTATTTGCTAAATCCGGT 753551 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||| ||||| |||||||| | ||| | || | ||||||||||| |||||| Sbjct 753550 TGCTCAATAAGCTTTAAGGCATCATCCAGACTTCTCGCAAGAAAATGAGCTCCCTGTGGA 753491 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4059 TTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGAT 4118 ||| |||||||| | ||||| |||||| || || ||||||| ||||||||| |||||||| Sbjct 756403 TTTATATTTCTCCAAATCAATTTCTGGGAAGAATGTGTCACTTTCAAAGTCCTGCATGAT 756344 Query 4119 CCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 ||| |||||||| ||||||| || || ||| | || ||| ||||| || Sbjct 756343 CCTTGTCACAAATAGTTTAACATGGCCTGGGTGACCCATGGCTTCCTT 756296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||| | |||||| |||||||||||||||||||||||||| | |||| Sbjct 768091 AAAACACCTTCATATTATTCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 768032 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || ||| ||||| ||||| ||| ||| Sbjct 768031 TCCTCCTGGACACCAGAAAAAACACCTGGGTAT 767999 >seq8862 Length=84653 Score = 102 bits (112), Expect = 6e-17 Identities = 341/522 (65%), Gaps = 8/522 (2%) Strand=Plus/Plus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTC 101592 ||||||||||| | |||||| || ||||| || | || ||| ||||| || ||| Sbjct 48612 TAAACAGCCATTTCCATTTTGATCCCTGGGTGAGGATCGTACCCTTC-AATATGAAAGTC 48670 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || ||||| || ||| | || | ||| |||| | | | | || | || || || Sbjct 48671 TTCAGCTTTGAAATCA--ACTGTCT-CAACTTTTCGAAGGATTTTGAGCTTCGGGAAAGG 48727 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712 || || |||| | ||| ||||| || ||||||||| | || || || || Sbjct 48728 TCCTGGTTCTCGCTGAAGCTGAATTTTCAGCCGCTCAATGTGAGTCAGGTAAATATGTGC 48787 Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCA 101772 |||||| | | |||| | ||| || || ||| || |||| || || |||||| | Sbjct 48788 ATCTCCCAAATTATGTACAAAGTCACCTGGCTGCAGGCCCGTGA-GTGCGCGATCATGTA 48846 Query 101773 AGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCT 101832 || | || | |||||| | ||||| || ||||| || | ||||| || |||| || Sbjct 48847 CGTGAGCAGTGCATAGCTGGTGATGTTGAAAGGCACGCCCAGGCCCATGTCTCCTGACCT 48906 Query 101833 TTGATACAGTTGACAGGAAAGCTTTCC-ATCACAGACATAAAATTGACTTAATACATGAC 101891 || | ||| || ||||| |||| || |||| | || | || | | |||||| Sbjct 48907 CTGGTGCAGCTGGCAGGACAGCTCACCGTTCAC-TATGTAGAGCTGGCAGAGGGCATGAC 48965 Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951 | || |||| | |||| ||| | ||| |||||||||| |||| | || |||| Sbjct 48966 ACGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCATACATGATGATTCTTC 49025 Query 101952 TATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTC 102011 | || || || ||||| || || ||||||| | || | ||||| ||||||| | Sbjct 49026 TGTCGTCTGGATTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTTAC 49085 Query 102012 CTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAAT 102053 || | |||| | | |||| |||||||| || |||| Sbjct 49086 CTGAACAATCTGAATTCATATCTTTGTATTCTGCCCCNAAAT 49127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360460844916014