Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq19690 297 2e-75 seq204 297 2e-75 seq1415 114 2e-20 seq21 105 8e-18 >seq19690 Length=14323 Score = 297 bits (328), Expect = 2e-75 Identities = 268/337 (80%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| || ||||||||||| | | | | |||||| ||||| | |||||||||||| Sbjct 9664 AGCAGGGCTTCAATGTCGGGCTCGATGTCGATGGTCTGAAAGCGGCGACTGTACCTGCGC 9605 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || |||| || |||| ||||||||| ||||||||||| |||||||||||| Sbjct 9604 ACAGGCACACCATCAGGGCCAACCAGGAACTTCTCAAAGTTCCAGGCAACGTCGTTGCGG 9545 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || ||||||| ||| |||||| | | ||||| || Sbjct 9544 CACACCGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGTAGTGCTATCGTCACTT 9485 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||| | ||||||||||| || ||||||||||||||||| || || | || || || ||| Sbjct 9484 GGCACTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCATTCGCGCCATTCACC 9425 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| |||||| ||||||| |||||||| ||| || || ||||||| ||| Sbjct 9424 TCGCACTTCTCAAAGAGCGTAAAGTTGGGCTCGAACCCGCCGCCGGGTCGGACGTACTTA 9365 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||||| || ||||| | |||| |||||| |||| Sbjct 9364 AGGGAGTTCAGAATCTCTTCGTTCTTGGCGTTCTCCT 9328 Score = 187 bits (206), Expect = 3e-42 Identities = 168/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| || || ||||| | || |||| Sbjct 9052 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGCACGACAAGGCCCCGGGGCCCGAGGC 8993 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||||||||||||||||||| || ||||| |||||||||||| | |||||||||||||| | Sbjct 8992 GCCGCTGCAGCTCGTTCATTTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 8933 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| ||| | ||| |||| | || ||||| || || || | Sbjct 8932 CATTCTCGATGAGCAGCACCTTGCCTTGCAAGGAGCCCAGACTTACAGGCTCCCCGCCTG 8873 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||||||| ||| || Sbjct 8872 CCAGCGGGCGCGCCGAGAAGGCGTGCACGGA 8842 >seq204 Length=878625 Score = 297 bits (328), Expect = 2e-75 Identities = 268/337 (80%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| || ||||||||||| | | | | |||||| ||||| | |||||||||||| Sbjct 814760 AGCAGGGCTTCAATGTCGGGCTCGATGTCGATGGTCTGAAAGCGGCGACTGTACCTGCGC 814819 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || |||| || |||| ||||||||| ||||||||||| |||||||||||| Sbjct 814820 ACAGGCACACCATCAGGGCCAACCAGGAACTTCTCAAAGTTCCAGGCAACGTCGTTGCGG 814879 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || ||||||| ||| |||||| | | ||||| || Sbjct 814880 CACACCGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGTAGTGCTATCGTCACTT 814939 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||| | ||||||||||| || ||||||||||||||||| || || | || || || ||| Sbjct 814940 GGCACTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCATTCGCGCCATTCACC 814999 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| |||||| ||||||| |||||||| ||| || || ||||||| ||| Sbjct 815000 TCGCACTTCTCAAAGAGCGTAAAGTTGGGCTCGAACCCGCCGCCGGGTCGGACGTACTTA 815059 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||||| || ||||| | |||| |||||| |||| Sbjct 815060 AGGGAGTTCAGAATCTCTTCGTTCTTGGCGTTCTCCT 815096 Score = 187 bits (206), Expect = 3e-42 Identities = 168/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| || || ||||| | || |||| Sbjct 815372 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGCACGACAAGGCCCCGGGGCCCGAGGC 815431 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||||||||||||||||||| || ||||| |||||||||||| | |||||||||||||| | Sbjct 815432 GCCGCTGCAGCTCGTTCATTTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 815491 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| ||| | ||| |||| | || ||||| || || || | Sbjct 815492 CATTCTCGATGAGCAGCACCTTGCCTTGCAAGGAGCCCAGACTTACAGGCTCCCCGCCTG 815551 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||||||| ||| || Sbjct 815552 CCAGCGGGCGCGCCGAGAAGGCGTGCACGGA 815582 >seq1415 Length=404680 Score = 114 bits (126), Expect = 2e-20 Identities = 202/287 (70%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || ||| Sbjct 288900 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTGC 288842 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 288841 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 288782 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | | |||| ||||| Sbjct 288781 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCTTCCCGCATCAAGCTCATCCGCCACTAC 288723 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 || ||| |||| |||| ||| ||||| ||||| |||| ||||| ||| Sbjct 288722 GTACAGCTGCTCTACCCCCGGGCCAAAAACGACCGCGTCTGGACTCTGGAGTTCGTGGGC 288663 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 288662 AAGCTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 288618 >seq21 Length=1633714 Score = 105 bits (116), Expect = 8e-18 Identities = 113/148 (76%), Gaps = 5/148 (3%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCG--GTGGCTGTACCTGC 83114 |||||||| | ||||| |||||| | | | | | | | | || |||||||||||| | Sbjct 542081 AGCAGGGCTTTGATGTAGGGCTCGATGTC---GCTGTAGGAACGCAGTGGCTGTACCTAC 542137 Query 83115 GCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174 |||| || | ||| |||| |||| | ||||||||| | ||||||||| ||||||| || Sbjct 542138 GCACAGGTGCGCCATCAGAGCCCATGAGGAACTTCTCAATGTTCCAGGCAACGTCGTCGC 542197 Query 83175 GGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||| |||||||||| ||||||| Sbjct 542198 AGCACACCCAAGACCAGGCATTGAGCTG 542225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607430705640560