Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1029 147 2e-30
seq633 127 2e-24
seq1701 104 2e-17
seq9005 102 8e-17
seq3013 87.8 2e-12
>seq1029
Length=469353
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| |||| ||||| |||
Sbjct 371837 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 371778
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| ||||| |||||| | |||||
Sbjct 371777 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCA 371719
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| || || ||||||||||| || | |||||||| ||||||||
Sbjct 371718 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 371659
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| ||||| ||| |||| ||||| | || ||||||||||||| ||
Sbjct 371658 CATTCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGTGG 371611
Score = 143 bits (158), Expect = 3e-29
Identities = 160/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| |||| ||||| |||
Sbjct 372293 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 372234
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 372233 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372175
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| ||| || ||||||||||| || | |||||||| ||||||||
Sbjct 372174 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372115
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||| ||| |||| |||| || |||
Sbjct 372114 CATCCAGAAAGAGTCCACCTTGCACCTGGTG 372084
Score = 143 bits (158), Expect = 3e-29
Identities = 160/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| |||| ||||| |||
Sbjct 372521 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 372462
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 372461 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372403
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| ||| || ||||||||||| || | |||||||| ||||||||
Sbjct 372402 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372343
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||| ||| |||| |||| || |||
Sbjct 372342 CATCCAGAAAGAGTCCACCTTGCACCTGGTG 372312
Score = 143 bits (158), Expect = 3e-29
Identities = 160/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| |||| ||||| |||
Sbjct 372749 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 372690
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 372689 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372631
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| ||| || ||||||||||| || | |||||||| ||||||||
Sbjct 372630 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372571
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||| ||| |||| |||| || |||
Sbjct 372570 CATCCAGAAAGAGTCCACCTTGCACCTGGTG 372540
Score = 141 bits (156), Expect = 1e-28
Identities = 160/212 (75%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || || || || || ||||| ||||||||| |||| ||||| |||
Sbjct 372978 AATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 372919
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||
Sbjct 372918 TGACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACC 372860
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| | | |||| ||| || ||||||||||| || | |||||||| |||||||
Sbjct 372859 AGCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACA 372800
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||||| ||| |||| |||| || |||
Sbjct 372799 ACATCCAGAAAGAGTCCACCTTGCACCTGGTG 372768
Score = 140 bits (154), Expect = 3e-28
Identities = 159/211 (75%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| |||| ||||| |||
Sbjct 372065 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 372006
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| ||||| |||||| | |||||
Sbjct 372005 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCA 371947
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| ||| || ||||||||||| || | |||||||| ||||||||
Sbjct 371946 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 371887
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||| ||| |||| |||| || |||
Sbjct 371886 CATCCAGAAAGAGTCCACCTTGCACCTGGTG 371856
>seq633
Length=582679
Score = 127 bits (140), Expect = 2e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| ||||| || || || || ||||| ||||||||| | || || || ||
Sbjct 204549 AAAATGCAAATTTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCC 204490
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | | |||| || || | || ||||| ||||||||| | |||
Sbjct 204489 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGAC 204430
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | ||||||| || ||||| |||||||| || | ||||| || || |||
Sbjct 204429 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 204370
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||||| ||| |||| |||| || |||
Sbjct 204369 AACATCCAGAAAGAGTCCACCTTGCACCTGGTG 204337
Score = 116 bits (128), Expect = 4e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || || || |||
Sbjct 204318 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 204259
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | || ||||| ||||||||| | ||||||
Sbjct 204258 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAG 204199
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | ||||||| || ||||| |||||||| || | ||||| || |||||||||
Sbjct 204198 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 204139
Query 40870 ATCCAGAAGGAGGCCAC 40886
|||||||| ||| ||||
Sbjct 204138 ATCCAGAAAGAGTCCAC 204122
Score = 84.2 bits (92), Expect = 2e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 40798 CCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 40857
||| | |||||||| | ||||||| || ||||| |||||||| || | ||||| ||
Sbjct 202909 CCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTT 202850
Query 40858 AACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|| |||||||||||||| ||| |||| || ||||| || | || ||||||| |||
Sbjct 202849 TCTGATTACAACATCCAGAAAGAGTCCACCCTCCATCTGGTCCTCCGTCTGAGGGGTGGC 202790
Query 40918 GGCT 40921
|||
Sbjct 202789 TGCT 202786
>seq1701
Length=366390
Score = 104 bits (114), Expect = 2e-17
Identities = 146/203 (72%), Gaps = 3/203 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || ||||| || || | |||||| ||||| || |||| ||| | |||
Sbjct 285410 ATGCAA-TCTTTGTAAAGACCCTGATGGGCAAGACCATTTCCCTCGAGGTCAAGCCCAGT 285468
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||||| | | | ||| | ||||| | ||||| |||||||| || | ||| ||
Sbjct 285469 GACAGCATCGAGAATGTCA--GTCAAAATCCAAGACAAGGAGGGCATTCCACCTGACTAG 285526
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
| ||| || || | ||||||||||||||||| || | ||| || |||||||||
Sbjct 285527 CCACGTCTGATGTTTGCGGGCAAACAGCTGGAGGATGGCTACACTCTTTCAGACTACAAC 285586
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
| |||||||||| |||| |||||
Sbjct 285587 AGCCAGAAGGAGTCCACCCTGCA 285609
Score = 91.5 bits (100), Expect = 2e-13
Identities = 127/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 40716 GGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAA 40775
|||||| ||||| || |||| ||| | ||| |||||| | | | ||| | ||
Sbjct 286129 GGGCAAGACCATTTCCCTCGAGGTCAAGCCCAGTGACAGCATCGAGAATGTCA--GTCAA 286186
Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835
||| | ||||| |||||||| || | ||| ||| ||| || || | |||||||||||
Sbjct 286187 AATCCAAGACAAGGAGGGCATTCCACCTGACTAGCCACGTCTGATGTTTGCGGGCAAACA 286246
Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|||||| || | ||| || |||||||||| |||||||||| |||| |||||
Sbjct 286247 GCTGGAGGATGGCTACACTCTTTCAGACTACAACAGCCAGAAGGAGTCCACCCTGCA 286303
>seq9005
Length=82358
Score = 102 bits (112), Expect = 8e-17
Identities = 144/201 (72%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || | || | |||||||| ||||||||| | || ||||| |||
Sbjct 12548 ATGCAGATCTTTGTGGAGACCTTGACGGGCAAGACCATCACCTT-GAGGTCGAGCCCAGT 12490
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| | ||| | | ||||| ||||||||||| || ||||||
Sbjct 12489 GACACCATCAAGAATGTCAACGCCAAAGTCCAAGACAAGGAGGGCATCCCAGCTGACCAG 12430
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || || | ||||||||||||||||| || | | ||| || |||||||||
Sbjct 12429 CAGCATCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCACACTCTTTCAGACTACAAC 12370
Query 40870 ATCCAGAAGGAGGCCACGCTG 40890
||||| | ||| |||| |||
Sbjct 12369 GTCCAGGAAGAGTCCACCCTG 12349
>seq3013
Length=259453
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|||||||||||| | || ||||||||||| || || | || ||||| | |||| |||
Sbjct 188306 GAGCCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCGTCTTTCCCATCGAGTACCACGAC 188247
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688
|| |||| ||||| || || || ||||| || || ||||| | |||||||||
Sbjct 188246 ATTTGGCAAATGTATAAGAAAGCGGAGGCTTCCTTTTGGACAGCCGAGGAGGT 188194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514063086756640
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