Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1029 136 3e-27 seq633 104 2e-17 seq1701 89.7 4e-13 seq9005 87.8 2e-12 >seq1029 Length=469353 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||| || || ||||| ||| || Sbjct 372768 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTC 372827 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| |||||| |||| | | |||||| || || || ||||||||||||||| Sbjct 372828 CAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTG 372887 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| || ||||||||||| ||| | || || Sbjct 372888 GATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 372947 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || ||||| |||||||| Sbjct 372948 GCCGGTCAGGGTCTTCACAAAGATCTGCAT 372977 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||| || || ||||| ||| || Sbjct 372084 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTC 372143 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| |||||| |||| | | |||||| || || || ||||||||||||||| Sbjct 372144 CAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTG 372203 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||||||||||| ||| | || || Sbjct 372204 GATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 372263 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || || || |||||||| Sbjct 372264 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 372293 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||| || || ||||| ||| || Sbjct 372312 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTC 372371 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| |||||| |||| | | |||||| || || || ||||||||||||||| Sbjct 372372 CAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTG 372431 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||||||||||| ||| | || || Sbjct 372432 GATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 372491 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || || || |||||||| Sbjct 372492 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 372521 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||| || || ||||| ||| || Sbjct 372540 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTC 372599 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| |||||| |||| | | |||||| || || || ||||||||||||||| Sbjct 372600 CAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTG 372659 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||||||||||| ||| | || || Sbjct 372660 GATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 372719 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || || || |||||||| Sbjct 372720 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 372749 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| ||||||||||| || || ||||| ||| || Sbjct 371629 ACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 371688 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| | | |||||| || || || || |||||||||||| Sbjct 371689 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCTTGG 371748 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||||||||||| ||| | || ||| Sbjct 371749 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 371808 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 371809 CCGGTCAGGGTCTTCACGAAGATCTGCAT 371837 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||| || || ||||| ||| || Sbjct 371856 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTC 371915 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| |||||| |||| | | |||||| || || || || |||||||||||| Sbjct 371916 CAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCTTG 371975 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||||||||||| ||| | || || Sbjct 371976 GATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 372035 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || || || |||||||| Sbjct 372036 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 372065 >seq633 Length=582679 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 204337 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 204396 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || ||||||| | |||||| || || || ||||| || || || Sbjct 204397 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTG 204456 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| || ||| || || | ||| | || || Sbjct 204457 GATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTT 204516 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||| || || ||||| ||||| Sbjct 204517 GCCGGTCAGAGTCTTCACGAAAATTTGCAT 204546 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || | |||||| ||| || ||||| || || Sbjct 204122 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 204181 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| | |||||| || || || ||||| || || || || || || Sbjct 204182 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 204241 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| || ||| || || | ||| | || ||||||||||| || Sbjct 204242 ACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 204301 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 204302 TTCACGAAGATCTGCAT 204318 >seq1701 Length=366390 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||||| || || ||||||| || | |||| ||| Sbjct 285619 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGCTGTTGTAGTCTGAAAGAGTGTAGCCATC 285560 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || | || ||||| ||| || || || |||||||||||||| Sbjct 285559 CTCCAGCTGTTTGCCCGCAAACATCAGACGTGGCTAGTCAGGTGGAATGCCCTCCTTGTC 285500 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | | ||||| | || | |||| | |||| || || |||||||| || | || Sbjct 285499 TTGGA--TTTTGACTGACATTCTCGATGCTGTCACTGGGCTTGACCTCGAGGGAAATGGT 285442 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| |||| || |||||||| || ||||| Sbjct 285441 CTTGCCCATCAGGGTCTTTACAAAGAT-TGCAT 285410 >seq9005 Length=82358 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||| | || ||||||| || | |||||| || | |||| | ||| Sbjct 12337 CAGCACCAAGGACAGGGTGGACTCTTCCTGGACGTTGTAGTCTGAAAGAGTGTGGCCATC 12396 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || | || ||| ||||||| || | || |||||||||||||| Sbjct 12397 CTCCAGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAGCTGGGATGCCCTCCTTGTC 12456 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | | ||| || || | | || |||||| || ||||||||| | ||| | || Sbjct 12457 TTGGACTTTGGCGTTGACATTCTTGATGGTGTCACTGGGCTCGACCTC-AAGGTGATGGT 12515 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| |||| || | ||||| |||||||| Sbjct 12516 CTTGCCCGTCAAGGTCTCCACAAAGATCTGCAT 12548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432881254191688