Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq260 141 9e-29 seq37793 104 2e-17 seq3013 104 2e-17 seq18778 102 8e-17 seq1459 91.5 1e-13 >seq260 Length=805401 Score = 141 bits (156), Expect = 9e-29 Identities = 467/713 (65%), Gaps = 26/713 (4%) Strand=Plus/Plus Query 15963 TCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGAT 16022 |||| |||||| || || || ||||||| ||||||||| |||||||| ||||| |||| Sbjct 242601 TCTTCTCAAAG---TTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAAGGGAT 242657 Query 16023 TT-----TTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCAC 16077 | | |||| || | | | | |||| ||||| | || || || |||| Sbjct 242658 TAGCTACTCTGAA-AACCTTGCTAA----AACCCAGTTCCAGCCTAAACCTTTCTTCCAC 242712 Query 16078 AAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGC 16137 | || || || || |||||||| ||||||| || || | || ||||| | || Sbjct 242713 GACTTAAATGTAGTGCTTCATTAAGGTGAAGTTCATCCCAATGAGCTTCACAGGCAAGGC 242772 Query 16138 TTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACT 16197 || | | || | | |||||| | | || | | ||||| ||| | ||| | || Sbjct 242773 CTCCCTAAGGAACTCCTGTTCTATCCTTGCAGCATTGGTAATTATTTCTTTCACT-CTCT 242831 Query 16198 ATT-TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATC 16256 | | | | || || |||||||| ||| ||| || ||| | ||||| ||||| | Sbjct 242832 GCTCTGATGTTTTGTGTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGC 242891 Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 | || || || | || | || || ||||| || || || |||| ||||||| ||| | Sbjct 242892 CCTCATCTCTGCATA--AGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCT 242949 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | ||| ||||| | ||| | |||||||||||||| || |||| ||||| ||| | | Sbjct 242950 TGAGCCAGAATATTGATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGG 243009 Query 16377 CAACCAATCGCTCACCGTACGT--TCTAtttttactttctatccattttttagcccaatt 16434 || | | || | || || || ||| | | | ||||| | | ||||| Sbjct 243010 TTACAATACATTCTACATAGGTAGCCTCTTTGTCC--CCAATCCAGTGCAAGGACCAATC 243067 Query 16435 tgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTT 16494 |||| | || | ||| ||| | || || ||||| || | | | | ||||||| Sbjct 243068 TGCTGCCTTCTTGAAACAAGCCATCATTTCAATGGCATTGAAGAGAAATTCCCTTTCTTT 243127 Query 16495 GCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCAT 16554 | || | ||| ||| |||| || || ||||||| ||||| ||||| | || ||||| Sbjct 243128 GGAAT-TTTAATGTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCAT 243186 Query 16555 TGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC--TTCAGAGTAAAAC 16612 || || || || ||||| || || | ||||| | || || || ||| | |||| | Sbjct 243187 GGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTG-ACTTTTCTGGCTAAATC 243245 Query 16613 CTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 ||| | || |||| || ||||| ||||| || ||||||| || || || Sbjct 243246 GCTTC-ACCAAATTTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAG 243297 >seq37793 Length=6272 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 4351 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 4410 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||||||||| || Sbjct 4411 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 4470 Query 16379 AC 16380 || Sbjct 4471 AC 4472 >seq3013 Length=259453 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 181824 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 181883 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||||||||| || Sbjct 181884 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 181943 Query 16379 AC 16380 || Sbjct 181944 AC 181945 >seq18778 Length=15734 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | | |||||||| | Sbjct 7938 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCCGCCATAACTGCAAAAC 7879 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct 7878 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 7819 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 7818 CCATAAAATCAAATGGATTTTCTG 7795 >seq1459 Length=399685 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/193 (72%), Gaps = 10/193 (5%) Strand=Plus/Minus Query 133445 ATAAAAGCGATAAAAATGATTATAGGTTTATAATTATCGATCGTTTGGGTTGTGATCTTC 133504 ||||||| | |||| | ||||||||||| || || |||| || || |||| |||| Sbjct 121013 ATAAAAGTGGAAAAAGT---TATAGGTTTATGATAATGGATCCCTTTGGGAGTGACCTTC 120957 Query 133505 AAAGAATAATTCAAGCTAATGATAACAAACTTCCTaaaaaaaCTGTTTTAAAAATAGGAG 133564 ||| |||| | |||| |||| || | || || |||| ||| || | || || Sbjct 120956 AAAAAATATATGAAGCAAATG---CCAGATTTTCTTGGAAAAATGTGTTGCAGCTA--AG 120902 Query 133565 CT--ATAATTTTGGTTATTTTAAAATTTATTCACGACAACGGGTACGTACATAGCGATAT 133622 || | |||| ||| |||| || ||| ||||||||| ||| ||| |||||| | ||||| Sbjct 120901 CTTAAGAATTCTGGATATTCTAGAATATATTCACGAGCACGAGTATGTACATGGAGATAT 120842 Query 133623 AAAGGCTTCTAAT 133635 |||||||| ||| Sbjct 120841 CAAGGCTTCAAAT 120829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461474157760400