Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2312 1552 0.0 seq4934 104 2e-17 >seq2312 Length=307694 Score = 1552 bits (1720), Expect = 0.0 Identities = 1316/1621 (81%), Gaps = 38/1621 (2%) Strand=Plus/Minus Query 107163 ATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTGGAGTTGAACTTGATGTTC- 107221 |||||||||| |||| | || ||| ||| | | | | |||||||||||||||||||| Sbjct 206083 ATATTTGTCTGGAGAATAAATATATTTTTGCAACTAGTTTGGAGTTGAACTTGATGTTCC 206024 Query 107222 TGGA-------------TTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATC--- 107265 |||| ||||||||||| | |||||||||||||||||||||||| Sbjct 206023 TGGAAATGTGTTCAGTGTTAGTTTGTAACTGGAGGCATTTTGTTCTGTCCAAGGATTCTG 205964 Query 107266 TCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTG 107325 ||||||||| ||| || ||||||| || | ||| |||||||| | |||||||| | Sbjct 205963 TCCTCCTCCTGCTTCCCAGTGCCCAGTCTGTACTGGTCTCCCATTCTGTGAAGATGATTA 205904 Query 107326 GGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGC 107385 |||||||| || || |||| | ||| | |||||||| || ||||||||||| |||| Sbjct 205903 AGTGGAAGA-GA--CTCTGCCAGAAGCATTACCTGTGGGCTCTAGGCTGCTATATTCTGC 205847 Query 107386 TGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATC 107445 ||||| ||||| ||||| ||||||| ||||| || |||||||| ||| |||||| Sbjct 205846 TGGCCATTGTTGCTCTGCGACTTTCTCTCAGATTGAAATGTGACTCTGATCATCTGGATC 205787 Query 107446 TGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGC 107505 ||||||||||||| || || || | || |||||||| || |||||||| |||||||| Sbjct 205786 TGGAGTCCAGGGAATTTCAAAGCCTGCGCTGTAGGGGTATCTTGTACAAGTCCCTGAAGC 205727 Query 107506 TGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGG 107565 |||||||| |||| |||||| ||||| | ||||||||||| ||| |||||||||||||| Sbjct 205726 TGCCAGCAGAGAGGTCCATCGACTGTCCAGGGATCACGCGGGGGTACCAGGAAGCAGTGA 205667 Query 107566 TCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCT 107625 |||||| || || | || ||||| || || || |||||| | | | |||| | | Sbjct 205666 GCCAGGCTCTGCTGAATAAACTGGAGGTCAAAAAGAAGCGGGCACTTTTCACAGATGCTG 205607 Query 107626 ATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGT 107685 | |||||| | || || ||| |||||||| ||| |||||| | ||||||| |||||||| Sbjct 205606 ACTACCTCTATATGACTAGAAACTGTGAGGACTTTAAGGCCAAGAGGAAGTACATACAGT 205547 Query 107686 TCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGA 107745 | |||||||| ||||| |||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct 205546 TTCCACTGAGCAAAGAGGAGCTAGACTTCCCTATTGCATACTCTATGGTGGTTCATGAGA 205487 Query 107746 AGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTG 107805 | ||||||||||||||| ||||||||||||| |||||| | ||||||||||||||||| Sbjct 205486 AAATTGAAAACTTTGAAAGGCTGCTGCGAGCTGTGTATACTCCTCAGAACATATACTGCA 205427 Query 107806 TCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 ||||| |||||| |||||||||||| |||||||||||||| |||| ||| |||| || | Sbjct 205426 TCCACATGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAGGGCGATTACATCTT 205367 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 |||| || ||||||||||| ||||||||| |||| | |||| ||||||| |||||||||| Sbjct 205366 GCTTTCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGGGTGTTTTATGCTTCCTGGTCCA 205307 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGT 107985 | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 205306 GGGTGCAGGCTGACCTGAACTGCATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAAT 205247 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| ||||||||||| ||||||||||| || |||||||||||||| |||||||||| || Sbjct 205246 ACTTCCTGAATACATGTGGGACAGACTTTCCTATAAAGACCAATGCTGAGATGGTCCAGG 205187 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105 |||||||||||||||| || ||||||||||||||||| ||| |||| |||||| ||||| Sbjct 205186 CCCTCAAGATGTTGAATGGGAAGAACAGTATGGAGTCAGAGATACCCACTGAGTACAAAA 205127 Query 108106 aaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGA 108165 || ||||||||||| | ||||||| |||||||| | | || |||||||||| || Sbjct 205126 AAGTCCGCTGGAAATATCACTATGAGATGACAGACCAATTACACATAACCAGCAAGAAGA 205067 Query 108166 AGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTC 108225 |||| ||||||||| |||||||| | ||||| | ||||||||||||| ||||||| |||| Sbjct 205066 AGGATCCTCCCCCTAATAATTTAACTATGTTTATAGGGAATGCCTATATTGTGGCTTCTC 205007 Query 108226 GAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCA 108285 ||| ||| | |||||||||||| | |||| ||||||||| |||| |||||||||| | Sbjct 205006 GAGACTTCATTCAACATGTCTTAAAGCACCCCAAATCCCAACAACTGATTGAATGGGTAA 204947 Query 108286 AAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGC 108345 |||||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||| Sbjct 204946 AAGACACCTACAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCGTGCACCATGGATGC 204887 Query 108346 CTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 |||||||| |||| ||||| ||||||| |||||||||||||||||||||| ||||||| Sbjct 204886 CTGGCTCTCTTCCCTACCACCGCAAGTATGACATCTCAGACATGACTGCCATTGCCAGGC 204827 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 | ||||||||| || || |||||||||||||| |||||| ||||||||||| |||| Sbjct 204826 TGGTCAAGTGGGAGGGACATGAGGGAGATGTCAGTGAGGGGGCACCTTATGCACCTTGCT 204767 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525 |||||| ||| | | || | |||| ||||| || || ||||||||| ||||||| || | Sbjct 204766 CTGGAACCCACCAGCGGTCTGTCTGTATTTATGGAGCTGGGGACCTGCACTGGATACTTC 204707 Query 108526 AGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGT 108585 | ||||||||||| |||| |||||||||||||| | |||||||||||| || || |||| Sbjct 204706 AAAACCATCACCTGCTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCAGT 204647 Query 108586 GCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAGCTGCACTGT 108645 |||||||||||||| | ||| ||||||||||||||||||||||||| |||| ||| || Sbjct 204646 GCTTAGAAGAGTACTTGCGTTATAAGGCCATCTATGGGACTGAACTCTGAGACACACCGT 204587 Query 108646 G-----------------GGCCAGG-GACTGTGCCAACATGCCCAGGGCGTACTGGTACT 108687 | || |||| | ||||| |||||||||| | | |||| ||| Sbjct 204586 GAGAGAATTGCTACCTGTGGACAGGAGCATGTGCAGACATGCCCAGAACTTGCTGGGACT 204527 Query 108688 GTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGC 108747 ||||||||| | ||| |||||| ||||||| |||||||||| ||| | || ||||||| Sbjct 204526 ATGTGGGGTGCGAGACTAGGGCTTTGGAATCTGTGGCATCCCCTAGGATAAGGGGGCTGC 204467 Query 108748 T 108748 | Sbjct 204466 T 204466 >seq4934 Length=300703 Score = 104 bits (114), Expect = 2e-17 Identities = 185/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || || || ||||| || || || ||||| ||| | || Sbjct 79294 CCCCTTAGTAAAGAAGAGGCGGAGTTTCCAATTGCATATTCCATAGTGGTTCATCACAAA 79353 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 79354 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATTTATATGCCTCAGAATTTCTATTGCATT 79413 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || || | || || ||||| | || |||| ||||| Sbjct 79414 CACGTGGACAAAAAATCAGAGGATTCCTTTTTAGCTGCGGTGATGGGCATTGCGTCCTGT 79473 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || ||||| |||||||| |||||| ||| ||||||| |||||| || Sbjct 79474 TTCAGTAACGTCTTTGTGGCCAGTCAGTTGGAGAGTGTGATTTATGCATCCTGGGGTAGG 79533 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGAC 107957 || || || ||||| ||||| ||| | ||| Sbjct 79534 GTCCAGGCGGACCTCAACTGCATGAAGGAC 79563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347506848159636