Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq260 199 4e-46 seq37793 123 2e-23 seq3013 123 2e-23 seq80406 100 3e-16 seq671 82.4 7e-11 >seq260 Length=805401 Score = 199 bits (220), Expect = 4e-46 Identities = 416/610 (68%), Gaps = 25/610 (4%) Strand=Plus/Plus Query 14189 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 14248 ||||| || ||| || ||| | ||||| || | |||||||||||| | |||||||| Sbjct 242855 TGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGC--ATAAGTTCA 242912 Query 14249 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAAT 14308 || ||||| || | || |||| || ||||| ||| || | ||| ||||||| || | Sbjct 242913 TTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAGAA 242972 Query 14309 GATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT 14368 || || |||||||| ||| | || ||||||||| | | || | | |||| || | | Sbjct 242973 GAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACATTCTACATAGGTA 243032 Query 14369 GCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 14428 || | ||||| | ||||| | | ||| || | | || || | | || |||| Sbjct 243033 GCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTTGAAACAAGCCATC 243092 Query 14429 GTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATA 14488 ||||||| ||||| || | | |||| | ||||| | | || |||||| |||||||| Sbjct 243093 ATTTCAATGGCATTGAAGAGAAATTCCCTTTCTTT-GGAATTTTAATGTAAATATCAATA 243151 Query 14489 AGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACAT 14548 || | ||||| |||||||| ||| |||||||||| || || || || ||||| ||||| Sbjct 243152 AGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 243211 Query 14549 CTAGCTTCTGACCATTGTAC--CTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTA 14606 | ||||||| || || |||| | ||||| | ||||||||| ||| |||| Sbjct 243212 CAGGCTTCTG-TAATCTGACTTTTCTG-GCTAAATCGCTTCACCAAATTTTTATTTACTA 243269 Query 14607 TACCATCACTAGCTGCAAAAAATGCCA----ATATGTTTTTAATAAAGTATTGCTCTTCA 14662 | |||||||| ||||||| || |||| ||| | | |||| ||| ||| ||| Sbjct 243270 TGCCATCACTCACTGCAAAGAAAGCCAGAACATAGGAT----GTAAAATATCTCTCCTCA 243325 Query 14663 TTGCTGAGTTTTTTCCAATCGGCTAA--ATCCTTAGAAAGATCTACTTCATCAACTGTCC 14720 | | || ||| | ||| | ||||| ||||||| || | || ||| || Sbjct 243326 GGTTTCAAGCCTTCCCAGT--GCTGAGTGTCCTTGTAAAGATCCACCACCTCGGCTGACC 243383 Query 14721 AAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAAT---ATAGGAA 14777 |||| ||| | ||||| ||||||||| ||| || || ||| ||| ||||||| Sbjct 243384 AAAAGGAAGCTTCGGCTTTCTTATACATTTGCCAAATATC---ATAGAATGGAATAGGAA 243440 Query 14778 AAACTACAAA 14787 | | ||||| Sbjct 243441 AGATGACAAA 243450 >seq37793 Length=6272 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 4349 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 4408 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || |||||||| ||||| || ||||| ||||| | Sbjct 4409 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 4468 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 4469 CTACAACACGTTCTCC 4484 >seq3013 Length=259453 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 181822 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 181881 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || |||||||| ||||| || ||||| ||||| | Sbjct 181882 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 181941 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 181942 CTACAACACGTTCTCC 181957 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 180242 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 180301 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||| |||||||| ||||| |||||| Sbjct 180302 TCCAGTGAAATATTCTCCATAAAGTCAAAGGGATTT 180337 >seq80406 Length=1056 Score = 100 bits (110), Expect = 3e-16 Identities = 86/105 (82%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 |||| ||||||| | | |||||| ||||||||||| | |||||||||||||| |||| Sbjct 855 CCTT-TCTTTAGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTA 797 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||||||||| || || || || ||||| ||||| | |||||||| Sbjct 796 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTG 752 >seq671 Length=569411 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 11641 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCG 11700 |||||||| | |||||||| |||| |||||| | |||| |||||| || | Sbjct 254512 CATCTAAAATTCGAACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATAAGCTGTG 254453 Query 11701 CCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11760 | | |||||| || |||| | | ||| | | ||| ||| ||||| | || ||| | Sbjct 254452 CAATTCGATCACCCTTTTTGACTTCAAACATTTCTTTGCCAAAATTAAACAGTACAACAC 254393 Query 11761 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810 ||| || || || |||||||||||||| || || |||||| ||||||| Sbjct 254392 CAACATTTCCTCTGTAATCTTCATCTATGACACCAGCTCCTACATCTATG 254343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481263252649520