Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq260 199 4e-46
seq37793 123 2e-23
seq3013 123 2e-23
seq80406 100 3e-16
seq671 82.4 7e-11
>seq260
Length=805401
Score = 199 bits (220), Expect = 4e-46
Identities = 416/610 (68%), Gaps = 25/610 (4%)
Strand=Plus/Plus
Query 14189 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 14248
||||| || ||| || ||| | ||||| || | |||||||||||| | ||||||||
Sbjct 242855 TGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGC--ATAAGTTCA 242912
Query 14249 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAAT 14308
|| ||||| || | || |||| || ||||| ||| || | ||| ||||||| || |
Sbjct 242913 TTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAGAA 242972
Query 14309 GATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT 14368
|| || |||||||| ||| | || ||||||||| | | || | | |||| || | |
Sbjct 242973 GAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACATTCTACATAGGTA 243032
Query 14369 GCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 14428
|| | ||||| | ||||| | | ||| || | | || || | | || ||||
Sbjct 243033 GCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTTGAAACAAGCCATC 243092
Query 14429 GTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATA 14488
||||||| ||||| || | | |||| | ||||| | | || |||||| ||||||||
Sbjct 243093 ATTTCAATGGCATTGAAGAGAAATTCCCTTTCTTT-GGAATTTTAATGTAAATATCAATA 243151
Query 14489 AGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACAT 14548
|| | ||||| |||||||| ||| |||||||||| || || || || ||||| |||||
Sbjct 243152 AGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 243211
Query 14549 CTAGCTTCTGACCATTGTAC--CTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTA 14606
| ||||||| || || |||| | ||||| | ||||||||| ||| ||||
Sbjct 243212 CAGGCTTCTG-TAATCTGACTTTTCTG-GCTAAATCGCTTCACCAAATTTTTATTTACTA 243269
Query 14607 TACCATCACTAGCTGCAAAAAATGCCA----ATATGTTTTTAATAAAGTATTGCTCTTCA 14662
| |||||||| ||||||| || |||| ||| | | |||| ||| ||| |||
Sbjct 243270 TGCCATCACTCACTGCAAAGAAAGCCAGAACATAGGAT----GTAAAATATCTCTCCTCA 243325
Query 14663 TTGCTGAGTTTTTTCCAATCGGCTAA--ATCCTTAGAAAGATCTACTTCATCAACTGTCC 14720
| | || ||| | ||| | ||||| ||||||| || | || ||| ||
Sbjct 243326 GGTTTCAAGCCTTCCCAGT--GCTGAGTGTCCTTGTAAAGATCCACCACCTCGGCTGACC 243383
Query 14721 AAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAAT---ATAGGAA 14777
|||| ||| | ||||| ||||||||| ||| || || ||| ||| |||||||
Sbjct 243384 AAAAGGAAGCTTCGGCTTTCTTATACATTTGCCAAATATC---ATAGAATGGAATAGGAA 243440
Query 14778 AAACTACAAA 14787
| | |||||
Sbjct 243441 AGATGACAAA 243450
>seq37793
Length=6272
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 4349 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 4408
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||||| || || || || |||||||| ||||| || ||||| ||||| |
Sbjct 4409 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 4468
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||||||||
Sbjct 4469 CTACAACACGTTCTCC 4484
>seq3013
Length=259453
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 181822 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 181881
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||||| || || || || |||||||| ||||| || ||||| ||||| |
Sbjct 181882 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 181941
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||||||||
Sbjct 181942 CTACAACACGTTCTCC 181957
Score = 93.3 bits (102), Expect = 4e-14
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || || ||||| | ||||| || | ||||| || |||||||||||||| || |||
Sbjct 180242 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 180301
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993
|||||||| ||||| |||||||| ||||| ||||||
Sbjct 180302 TCCAGTGAAATATTCTCCATAAAGTCAAAGGGATTT 180337
>seq80406
Length=1056
Score = 100 bits (110), Expect = 3e-16
Identities = 86/105 (82%), Gaps = 1/105 (1%)
Strand=Plus/Minus
Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513
|||| ||||||| | | |||||| ||||||||||| | |||||||||||||| ||||
Sbjct 855 CCTT-TCTTTAGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTA 797
Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558
|||||||||| || || || || ||||| ||||| | ||||||||
Sbjct 796 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTG 752
>seq671
Length=569411
Score = 82.4 bits (90), Expect = 7e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 11641 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCG 11700
|||||||| | |||||||| |||| |||||| | |||| |||||| || |
Sbjct 254512 CATCTAAAATTCGAACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATAAGCTGTG 254453
Query 11701 CCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11760
| | |||||| || |||| | | ||| | | ||| ||| ||||| | || ||| |
Sbjct 254452 CAATTCGATCACCCTTTTTGACTTCAAACATTTCTTTGCCAAAATTAAACAGTACAACAC 254393
Query 11761 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810
||| || || || |||||||||||||| || || |||||| |||||||
Sbjct 254392 CAACATTTCCTCTGTAATCTTCATCTATGACACCAGCTCCTACATCTATG 254343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 481263252649520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |