Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq260 176 4e-39 seq37793 127 2e-24 seq3013 125 7e-24 seq2256 120 3e-22 seq7635 111 1e-19 seq1401 111 1e-19 seq80406 82.4 7e-11 >seq260 Length=805401 Score = 176 bits (194), Expect = 4e-39 Identities = 464/700 (66%), Gaps = 20/700 (3%) Strand=Plus/Plus Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 ||| |||||||| ||||||||||| |||| |||||||||| ||| |||||| ||| | Sbjct 242608 AAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAAGGGATTAGCTACTCT 242667 Query 11428 GAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTG 11487 ||| || || | |||| | || || || ||| | |||| || || || || Sbjct 242668 GAAAACCTTGCTAAAACCCAGTTCCAGCCTAAACCTTTCTTCCACGACTTAAATGTAGTG 242727 Query 11488 AGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547 |||||| | ||||| || || || | ||| || | || | | | ||||| Sbjct 242728 CTTCATTAAGGTGAAGTTCATCCCAATGAGCTTCACAGGCAAGGCCTCCCTAAGGAACTC 242787 Query 11548 CTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACT-TCCTTAGATGGTGGAT 11606 || |||||| | | |||| | ||||| | || || | || |||| | | Sbjct 242788 CTGTTCTATCCTTGCAGCATTGGTAATTATTT-CTTTCACTCTCTGCTCTGATGTTTTGT 242846 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 ||| || ||||| ||| ||| || ||| | ||||| || || || || ||||| | || Sbjct 242847 GTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGCATA 242906 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 |||||||| ||||| || | || |||| || ||||| ||| || | ||| ||||| | Sbjct 242907 --AGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATATTG 242964 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||| | |||||||||||||| ||| | ||||| || ||| | | ||| | | |||| Sbjct 242965 ATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACATTCTA 243024 Query 11787 CATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843 |||| || ||| ||| ||||| | || |||||| ||| ||| || | | Sbjct 243025 CATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTTGAAAC 243084 Query 11844 ATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATA 11901 | |||| |||| || || || | | |||| | ||| | | | | ||| | Sbjct 243085 AAGCCATCATTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGA----ATTTTA---A 243137 Query 11902 TGTATCTATTAATA----AACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAA 11957 |||| ||| |||| ||||||| ||||| ||||| | |||||||| || ||||| | Sbjct 243138 TGTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGGA 243197 Query 11958 ATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAAT 12017 | ||||||||||| | || |||| | ||| | | ||||| | | | |||| Sbjct 243198 AGCCATAGAAACAGCAGGCTTCTGTAATCTGACTTTTCTGGCTAAATCGCTTCACCAAAT 243257 Query 12018 TCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057 | | |||||| || |||||||| |||||| || || || Sbjct 243258 TTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAG 243297 >seq37793 Length=6272 Score = 127 bits (140), Expect = 2e-24 Identities = 113/140 (81%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||||| ||||||||| || Sbjct 4351 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 4410 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 4411 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 4470 Query 11774 ACTACTCTTTCTCC-ATATA 11792 || || | |||||| ||||| Sbjct 4471 ACAACACGTTCTCCTATATA 4490 >seq3013 Length=259453 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||||| ||||||||| || Sbjct 181824 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 181883 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 181884 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 181943 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 181944 ACAACACGTTCTCC 181957 >seq2256 Length=312150 Score = 120 bits (132), Expect = 3e-22 Identities = 293/436 (67%), Gaps = 10/436 (2%) Strand=Plus/Plus Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATA 36882 ||||| || | |||| |||||||||| || | ||| |||| || || ||||||||| Sbjct 307583 TTTGTGCTTAAATAACACATTCCAGTCTTCAAACCCTGCTTCCAGCCATAGAAATGCATA 307642 Query 36883 CTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGAC-TTTGATC 36941 || || ||||| | | |||| | | | |||| || ||| || || | ||||||| Sbjct 307643 CTAGTGAGTTTGCCATTGTTAGGCTCAGCAATATGGATGTTCAAAGACTGGCTTTTGATC 307702 Query 36942 TATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAAC 37001 || || |||||||| | |||||||| | | || | ||| ||||| || ||||| || Sbjct 307703 AATGAATGCACCTCTCTTCGCTGCCATCTTGAGAACAGTTTTCTGAGAGATTTCCCACAC 307762 Query 37002 CGTTTTATATATTTGTTTTATATTATCTGGTAAATCT-AAATG--TTGAATAGAACCATT 37058 |||| || | ||| || | | ||| || | ||| ||| || |||| |||| Sbjct 307763 AATTTTTTAAAGTTGCTTCAGGTCATCAGGAATTTCTGGTATGCTCTGGGTAGAGCCATG 307822 Query 37059 ATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTA-TTAGTTCTC 37117 || | ||| || || || || | ||| ||| | || || | | || ||| Sbjct 307823 GCATACAATAATCTGGTTTTTCATTTCCTCATTATACA-AGCCCTGCTCAGTAAGATCTT 307881 Query 37118 TCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATAT 37177 |||||| || |||| ||||| | ||| | | | ||||| ||||| ||||| || | Sbjct 307882 TCAATAAGTTTGGACTTACAGTCCTAAATTTTACTGATAAGACTCTGTGAGTATAAATGT 307941 Query 37178 TGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAG 37237 |||| ||||| |||| |||||| ||||| | | | || ||| || || ||||||| Sbjct 307942 TGCTGGTATAAGGTTTAATGGATTCATTCT---TCAGGATCCAAGA-GTTGAAGCAGTAG 307997 Query 37238 GCATTGGTGCTATTAG 37253 |||| || || || || Sbjct 307998 GCATGGGAGCAATAAG 308013 >seq7635 Length=151111 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| ||||| ||||| | ||||| || ||||| ||||| ||||||||| Sbjct 95077 ACCTGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 95136 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 95137 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 95196 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 95197 CTGTTTCTTACACCAT 95212 >seq1401 Length=405806 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | ||||| || | Sbjct 92090 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGTCCTCTCTTCT 92149 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 92150 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 92209 Query 11772 CTACTACTCTTTCTCC 11787 | || | ||||| || Sbjct 92210 CCACAATCCTTTCCCC 92225 >seq80406 Length=1056 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 11880 TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATAT 11939 ||||| || |||| | | || ||||| || | | |||||||||||| ||||| || | Sbjct 853 TTTCTTTAGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 794 Query 11940 TTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 ||||||| || ||||| || ||||||||||| || || |||| | ||| || || Sbjct 793 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGAACTTC 739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467473465488160