Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq260 176 4e-39
seq37793 127 2e-24
seq3013 125 7e-24
seq2256 120 3e-22
seq7635 111 1e-19
seq1401 111 1e-19
seq80406 82.4 7e-11
>seq260
Length=805401
Score = 176 bits (194), Expect = 4e-39
Identities = 464/700 (66%), Gaps = 20/700 (3%)
Strand=Plus/Plus
Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427
||| |||||||| ||||||||||| |||| |||||||||| ||| |||||| ||| |
Sbjct 242608 AAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAAGGGATTAGCTACTCT 242667
Query 11428 GAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTG 11487
||| || || | |||| | || || || ||| | |||| || || || ||
Sbjct 242668 GAAAACCTTGCTAAAACCCAGTTCCAGCCTAAACCTTTCTTCCACGACTTAAATGTAGTG 242727
Query 11488 AGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547
|||||| | ||||| || || || | ||| || | || | | | |||||
Sbjct 242728 CTTCATTAAGGTGAAGTTCATCCCAATGAGCTTCACAGGCAAGGCCTCCCTAAGGAACTC 242787
Query 11548 CTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACT-TCCTTAGATGGTGGAT 11606
|| |||||| | | |||| | ||||| | || || | || |||| | |
Sbjct 242788 CTGTTCTATCCTTGCAGCATTGGTAATTATTT-CTTTCACTCTCTGCTCTGATGTTTTGT 242846
Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666
||| || ||||| ||| ||| || ||| | ||||| || || || || ||||| | ||
Sbjct 242847 GTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGCATA 242906
Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726
|||||||| ||||| || | || |||| || ||||| ||| || | ||| ||||| |
Sbjct 242907 --AGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATATTG 242964
Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786
||| | |||||||||||||| ||| | ||||| || ||| | | ||| | | ||||
Sbjct 242965 ATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACATTCTA 243024
Query 11787 CATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843
|||| || ||| ||| ||||| | || |||||| ||| ||| || | |
Sbjct 243025 CATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTTGAAAC 243084
Query 11844 ATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATA 11901
| |||| |||| || || || | | |||| | ||| | | | | ||| |
Sbjct 243085 AAGCCATCATTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGA----ATTTTA---A 243137
Query 11902 TGTATCTATTAATA----AACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAA 11957
|||| ||| |||| ||||||| ||||| ||||| | |||||||| || ||||| |
Sbjct 243138 TGTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGGA 243197
Query 11958 ATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAAT 12017
| ||||||||||| | || |||| | ||| | | ||||| | | | ||||
Sbjct 243198 AGCCATAGAAACAGCAGGCTTCTGTAATCTGACTTTTCTGGCTAAATCGCTTCACCAAAT 243257
Query 12018 TCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057
| | |||||| || |||||||| |||||| || || ||
Sbjct 243258 TTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAG 243297
>seq37793
Length=6272
Score = 127 bits (140), Expect = 2e-24
Identities = 113/140 (81%), Gaps = 1/140 (1%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| |||||||| | || ||||||| ||||||||| ||
Sbjct 4351 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 4410
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| |||
Sbjct 4411 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 4470
Query 11774 ACTACTCTTTCTCC-ATATA 11792
|| || | |||||| |||||
Sbjct 4471 ACAACACGTTCTCCTATATA 4490
>seq3013
Length=259453
Score = 125 bits (138), Expect = 7e-24
Identities = 108/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| |||||||| | || ||||||| ||||||||| ||
Sbjct 181824 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 181883
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| |||
Sbjct 181884 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 181943
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||||||
Sbjct 181944 ACAACACGTTCTCC 181957
>seq2256
Length=312150
Score = 120 bits (132), Expect = 3e-22
Identities = 293/436 (67%), Gaps = 10/436 (2%)
Strand=Plus/Plus
Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATA 36882
||||| || | |||| |||||||||| || | ||| |||| || || |||||||||
Sbjct 307583 TTTGTGCTTAAATAACACATTCCAGTCTTCAAACCCTGCTTCCAGCCATAGAAATGCATA 307642
Query 36883 CTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGAC-TTTGATC 36941
|| || ||||| | | |||| | | | |||| || ||| || || | |||||||
Sbjct 307643 CTAGTGAGTTTGCCATTGTTAGGCTCAGCAATATGGATGTTCAAAGACTGGCTTTTGATC 307702
Query 36942 TATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAAC 37001
|| || |||||||| | |||||||| | | || | ||| ||||| || ||||| ||
Sbjct 307703 AATGAATGCACCTCTCTTCGCTGCCATCTTGAGAACAGTTTTCTGAGAGATTTCCCACAC 307762
Query 37002 CGTTTTATATATTTGTTTTATATTATCTGGTAAATCT-AAATG--TTGAATAGAACCATT 37058
|||| || | ||| || | | ||| || | ||| ||| || |||| ||||
Sbjct 307763 AATTTTTTAAAGTTGCTTCAGGTCATCAGGAATTTCTGGTATGCTCTGGGTAGAGCCATG 307822
Query 37059 ATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTA-TTAGTTCTC 37117
|| | ||| || || || || | ||| ||| | || || | | || |||
Sbjct 307823 GCATACAATAATCTGGTTTTTCATTTCCTCATTATACA-AGCCCTGCTCAGTAAGATCTT 307881
Query 37118 TCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATAT 37177
|||||| || |||| ||||| | ||| | | | ||||| ||||| ||||| || |
Sbjct 307882 TCAATAAGTTTGGACTTACAGTCCTAAATTTTACTGATAAGACTCTGTGAGTATAAATGT 307941
Query 37178 TGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAG 37237
|||| ||||| |||| |||||| ||||| | | | || ||| || || |||||||
Sbjct 307942 TGCTGGTATAAGGTTTAATGGATTCATTCT---TCAGGATCCAAGA-GTTGAAGCAGTAG 307997
Query 37238 GCATTGGTGCTATTAG 37253
|||| || || || ||
Sbjct 307998 GCATGGGAGCAATAAG 308013
>seq7635
Length=151111
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| ||||| ||||| | ||||| || ||||| ||||| |||||||||
Sbjct 95077 ACCTGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 95136
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || |||||||||||||| || || || |
Sbjct 95137 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 95196
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 95197 CTGTTTCTTACACCAT 95212
>seq1401
Length=405806
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | ||||| || |
Sbjct 92090 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGTCCTCTCTTCT 92149
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| |
Sbjct 92150 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 92209
Query 11772 CTACTACTCTTTCTCC 11787
| || | ||||| ||
Sbjct 92210 CCACAATCCTTTCCCC 92225
>seq80406
Length=1056
Score = 82.4 bits (90), Expect = 7e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 11880 TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATAT 11939
||||| || |||| | | || ||||| || | | |||||||||||| ||||| || |
Sbjct 853 TTTCTTTAGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 794
Query 11940 TTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994
||||||| || ||||| || ||||||||||| || || |||| | ||| || ||
Sbjct 793 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGAACTTC 739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467473465488160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |