Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq40139 149 5e-31
seq17702 149 5e-31
seq8862 147 2e-30
seq12448 145 7e-30
seq131279 86.0 5e-12
>seq40139
Length=6180
Score = 149 bits (164), Expect = 5e-31
Identities = 138/175 (79%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||||| |||||||| ||||||| ||||| || || || |||||||||||||| || |
Sbjct 1010 TCAGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAG 951
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || |||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 950 GCACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 891
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163
||||||| ||||| || | | || || ||||| || ||||| | | ||| ||
Sbjct 890 CCACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGAGGGAGATC 836
>seq17702
Length=18075
Score = 149 bits (164), Expect = 5e-31
Identities = 138/175 (79%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||||| |||||||| ||||||| ||||| || || || |||||||||||||| || |
Sbjct 13254 TCAGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAG 13195
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || |||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 13194 GCACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 13135
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163
||||||| ||||| || | | || || ||||| || ||||| | | ||| ||
Sbjct 13134 CCACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGAGGGAGATC 13080
>seq8862
Length=84653
Score = 147 bits (162), Expect = 2e-30
Identities = 181/246 (74%), Gaps = 1/246 (0%)
Strand=Plus/Plus
Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004
||||| || || || ||||| | || |||||||| || || ||||||||||| |||
Sbjct 48776 GTAAATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCTGCAGGCCCGTGA-GTG 48834
Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064
||||||| ||||| || || || ||||||| |||||| || || || || ||||||||
Sbjct 48835 CGCGATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAGGCACGCCCAGGCCCAT 48894
Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124
||| | |||||||||| |||||||||||||||||| || | | ||| | ||| ||
Sbjct 48895 GTCTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACTATGTAGAGCTGGCA 48954
Query 21125 CAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184
| | ||||| ||||| || |||||| | | ||| || || ||||| || ||||
Sbjct 48955 GAGGGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCATACAT 49014
Query 21185 AACGAT 21190
| |||
Sbjct 49015 GATGAT 49020
>seq12448
Length=43075
Score = 145 bits (160), Expect = 7e-30
Identities = 137/175 (78%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||||| |||||||| ||||||| ||||| || || || |||||||||||||| || |
Sbjct 9229 TCAGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAG 9288
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || |||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 9289 GCACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCA 9348
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163
||||||| || || || | | || || ||||| || ||||| | | ||| ||
Sbjct 9349 CCACGTAGAATTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGAGGGAGATC 9403
>seq131279
Length=636
Score = 86.0 bits (94), Expect = 5e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 21364 CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGG 21423
|||||||| | || || |||| || ||||| || || || || | || || |
Sbjct 44 CCAAAAAGTCTCGAGAACCGTTGGCATCCCAGATCTTCACTCCCTTGGAAGAGAGCTTTT 103
Query 21424 TGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACA 21483
| | || ||||| | ||||||||||||||| ||| | || | ||| |||| ||||
Sbjct 104 TCGTGTTTGTGGATCTTTTGATAAACCACAGCAGCTCTTTCAAAATACCCTTCCAGAACA 163
Query 21484 CCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGA 21543
| |||||| || | ||| |||| || || |||||| | || | ||||| || | ||
Sbjct 164 CAGCTTTGGTTGTCAGCAGGTGAAATTCATCTCTGAGGCTGTAGTGCGCCTGCAGGCAGA 223
Query 21544 ACACGGACCTGGTGCCCACGCCCGT 21568
|||| ||| ||||||| ||||||
Sbjct 224 ACACCGACAGGGTGCCCGTGCCCGT 248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426840100170720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |