Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq40139 149 5e-31 seq17702 149 5e-31 seq8862 147 2e-30 seq12448 145 7e-30 seq131279 86.0 5e-12 >seq40139 Length=6180 Score = 149 bits (164), Expect = 5e-31 Identities = 138/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||||||| ||||||| ||||| || || || |||||||||||||| || | Sbjct 1010 TCAGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAG 951 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || |||||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 950 GCACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 891 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | | || || ||||| || ||||| | | ||| || Sbjct 890 CCACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGAGGGAGATC 836 >seq17702 Length=18075 Score = 149 bits (164), Expect = 5e-31 Identities = 138/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||||||| ||||||| ||||| || || || |||||||||||||| || | Sbjct 13254 TCAGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAG 13195 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || |||||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 13194 GCACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 13135 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | | || || ||||| || ||||| | | ||| || Sbjct 13134 CCACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGAGGGAGATC 13080 >seq8862 Length=84653 Score = 147 bits (162), Expect = 2e-30 Identities = 181/246 (74%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| || || || ||||| | || |||||||| || || ||||||||||| ||| Sbjct 48776 GTAAATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCTGCAGGCCCGTGA-GTG 48834 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||||||| ||||| || || || ||||||| |||||| || || || || |||||||| Sbjct 48835 CGCGATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAGGCACGCCCAGGCCCAT 48894 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124 ||| | |||||||||| |||||||||||||||||| || | | ||| | ||| || Sbjct 48895 GTCTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACTATGTAGAGCTGGCA 48954 Query 21125 CAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184 | | ||||| ||||| || |||||| | | ||| || || ||||| || |||| Sbjct 48955 GAGGGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCATACAT 49014 Query 21185 AACGAT 21190 | ||| Sbjct 49015 GATGAT 49020 >seq12448 Length=43075 Score = 145 bits (160), Expect = 7e-30 Identities = 137/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||||||| ||||||| ||||| || || || |||||||||||||| || | Sbjct 9229 TCAGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAG 9288 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || |||||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 9289 GCACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCA 9348 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| || || || | | || || ||||| || ||||| | | ||| || Sbjct 9349 CCACGTAGAATTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGAGGGAGATC 9403 >seq131279 Length=636 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 21364 CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGG 21423 |||||||| | || || |||| || ||||| || || || || | || || | Sbjct 44 CCAAAAAGTCTCGAGAACCGTTGGCATCCCAGATCTTCACTCCCTTGGAAGAGAGCTTTT 103 Query 21424 TGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACA 21483 | | || ||||| | ||||||||||||||| ||| | || | ||| |||| |||| Sbjct 104 TCGTGTTTGTGGATCTTTTGATAAACCACAGCAGCTCTTTCAAAATACCCTTCCAGAACA 163 Query 21484 CCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGA 21543 | |||||| || | ||| |||| || || |||||| | || | ||||| || | || Sbjct 164 CAGCTTTGGTTGTCAGCAGGTGAAATTCATCTCTGAGGCTGTAGTGCGCCTGCAGGCAGA 223 Query 21544 ACACGGACCTGGTGCCCACGCCCGT 21568 |||| ||| ||||||| |||||| Sbjct 224 ACACCGACAGGGTGCCCGTGCCCGT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426840100170720