Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1029 104 2e-17
seq5167 102 8e-17
seq633 95.1 1e-14
seq50868 91.5 1e-13
seq19457 91.5 1e-13
>seq1029
Length=469353
Score = 104 bits (114), Expect = 2e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-T 139605
|| |||| || ||||| | || |||||||| |||||||| || || || |||| |
Sbjct 371620 AAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGT 371679
Query 139606 CGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTC 139665
| | ||||| |||||||| |||||| |||||| | ||||| || || || || || ||
Sbjct 371680 CCA-TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTC 371738
Query 139666 TTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725
||||| ||| || || | | || | ||||| ||||||| ||||| | |||
Sbjct 371739 CTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGT 371798
Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| ||||||||||||| || || ||||| || |||||
Sbjct 371799 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 371837
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || || |||| ||||| |||||||| |||
Sbjct 372097 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372156
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||||| | ||||| || || || ||||| || ||||| ||| || ||
Sbjct 372157 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372216
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| ||||| | ||| | ||||||||||||| ||
Sbjct 372217 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372276
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 372277 TTCACGAAGATCTGCAT 372293
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || || |||| ||||| |||||||| |||
Sbjct 372325 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372384
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||||| | ||||| || || || ||||| || ||||| ||| || ||
Sbjct 372385 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372444
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| ||||| | ||| | ||||||||||||| ||
Sbjct 372445 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372504
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 372505 TTCACGAAGATCTGCAT 372521
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || || |||| ||||| |||||||| |||
Sbjct 372553 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372612
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||||| | ||||| || || || ||||| || ||||| ||| || ||
Sbjct 372613 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372672
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| ||||| | ||| | ||||||||||||| ||
Sbjct 372673 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372732
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 372733 TTCACGAAGATCTGCAT 372749
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || || |||| ||||| |||||||| |||
Sbjct 371869 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 371928
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||||| | ||||| || || || || || || ||||| ||| || ||
Sbjct 371929 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTG 371988
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| ||||| | ||| | ||||||||||||| ||
Sbjct 371989 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372048
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 372049 TTCACGAAGATCTGCAT 372065
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || || |||| ||||| |||||||| |||
Sbjct 372781 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372840
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||||| | ||||| || || || ||||| || ||||| ||| || ||
Sbjct 372841 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372900
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| ||||| | ||| | ||||||||||||| ||
Sbjct 372901 ACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372960
Query 139748 TTTACGAATATTTGCAT 139764
|| || || || |||||
Sbjct 372961 TTCACAAAGATCTGCAT 372977
>seq5167
Length=254018
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 139571 GACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGC 139629
||||| || ||||||||||| || || || | || | ||||| || || ||||||||
Sbjct 220521 GACTCCTTCTGAATGTTATAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTACCAGC 220579
Query 139630 ATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAG 139689
| ||||||| | ||||||||| ||||| || ||||| || || ||| || ||||
Sbjct 220580 AGAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTAC 220639
Query 139690 CTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTT 139749
| ||| | ||| || ||| || ||||||| || | ||||| || | || |||||
Sbjct 220640 ATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCATAAAGGTTTT 220699
Query 139750 TACGAATATTTGCAT 139764
|||||| || |||||
Sbjct 220700 TACGAAAATCTGCAT 220714
>seq633
Length=582679
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| ||||| | |||| ||||| ||||| || ||
Sbjct 204350 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 204409
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || || || ||||||||||| || ||| || ||
Sbjct 204410 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 204469
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| |||||||||| || | ||| | ||||||||||||| ||
Sbjct 204470 ACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTC 204529
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| ||||||||
Sbjct 204530 TTCACGAAAATTTGCAT 204546
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || | |||| ||||| ||||| || ||
Sbjct 204122 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 204181
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || || || ||||||||||| || ||| || ||
Sbjct 204182 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 204241
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| |||||||||| || | ||| | ||||||||||||| ||
Sbjct 204242 ACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 204301
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 204302 TTCACGAAGATCTGCAT 204318
>seq50868
Length=3469
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| || ||||| || ||||||||||| || || || | || | |||||||| ||
Sbjct 2098 TGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCA-TCTTCGAGGTG 2040
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
||||||||| ||||||| | ||||||||| ||||| || ||||| || || ||| ||
Sbjct 2039 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 1980
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|||| | ||| | ||| || | ||| || ||||| || | ||| | || |
Sbjct 1979 AGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCAT 1920
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
| ||||||| ||| || |||||
Sbjct 1919 AAGGGTTTTTATGAAAATCTGCAT 1896
>seq19457
Length=14611
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| || ||||| || ||||||||||| || || || | || | |||||||| ||
Sbjct 1949 TGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCA-TCTTCGAGGTG 2007
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
||||||||| ||||||| | ||||||||| ||||| || ||||| || || ||| ||
Sbjct 2008 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2067
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|||| | ||| | ||| || | ||| || ||||| || | ||| | || |
Sbjct 2068 AGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCAT 2127
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
| ||||||| ||| || |||||
Sbjct 2128 AAGGGTTTTTATGAAAATCTGCAT 2151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494950869588800
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