Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1029 104 2e-17 seq5167 102 8e-17 seq633 95.1 1e-14 seq50868 91.5 1e-13 seq19457 91.5 1e-13 >seq1029 Length=469353 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-T 139605 || |||| || ||||| | || |||||||| |||||||| || || || |||| | Sbjct 371620 AAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGT 371679 Query 139606 CGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTC 139665 | | ||||| |||||||| |||||| |||||| | ||||| || || || || || || Sbjct 371680 CCA-TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTC 371738 Query 139666 TTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| || || | | || | ||||| ||||||| ||||| | ||| Sbjct 371739 CTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGT 371798 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||||||||||| || || ||||| || ||||| Sbjct 371799 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 371837 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| ||||| |||||||| ||| Sbjct 372097 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372156 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 372157 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372216 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | ||||||||||||| || Sbjct 372217 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372276 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 372277 TTCACGAAGATCTGCAT 372293 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| ||||| |||||||| ||| Sbjct 372325 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372384 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 372385 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372444 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | ||||||||||||| || Sbjct 372445 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372504 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 372505 TTCACGAAGATCTGCAT 372521 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| ||||| |||||||| ||| Sbjct 372553 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372612 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 372613 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372672 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | ||||||||||||| || Sbjct 372673 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372732 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 372733 TTCACGAAGATCTGCAT 372749 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| ||||| |||||||| ||| Sbjct 371869 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 371928 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| | ||||| || || || || || || ||||| ||| || || Sbjct 371929 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTG 371988 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | ||||||||||||| || Sbjct 371989 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372048 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 372049 TTCACGAAGATCTGCAT 372065 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| ||||| |||||||| ||| Sbjct 372781 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372840 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 372841 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372900 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | ||||||||||||| || Sbjct 372901 ACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372960 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 372961 TTCACAAAGATCTGCAT 372977 >seq5167 Length=254018 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 139571 GACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGC 139629 ||||| || ||||||||||| || || || | || | ||||| || || |||||||| Sbjct 220521 GACTCCTTCTGAATGTTATAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTACCAGC 220579 Query 139630 ATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAG 139689 | ||||||| | ||||||||| ||||| || ||||| || || ||| || |||| Sbjct 220580 AGAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTAC 220639 Query 139690 CTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTT 139749 | ||| | ||| || ||| || ||||||| || | ||||| || | || ||||| Sbjct 220640 ATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCATAAAGGTTTT 220699 Query 139750 TACGAATATTTGCAT 139764 |||||| || ||||| Sbjct 220700 TACGAAAATCTGCAT 220714 >seq633 Length=582679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||| ||||| || || Sbjct 204350 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 204409 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || ||||||||||| || ||| || || Sbjct 204410 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 204469 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||||||||| || | ||| | ||||||||||||| || Sbjct 204470 ACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTC 204529 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 204530 TTCACGAAAATTTGCAT 204546 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || | |||| ||||| ||||| || || Sbjct 204122 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 204181 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || ||||||||||| || ||| || || Sbjct 204182 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 204241 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||||||||| || | ||| | ||||||||||||| || Sbjct 204242 ACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 204301 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 204302 TTCACGAAGATCTGCAT 204318 >seq50868 Length=3469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| || ||||||||||| || || || | || | |||||||| || Sbjct 2098 TGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCA-TCTTCGAGGTG 2040 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 2039 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 1980 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || ||||| || | ||| | || | Sbjct 1979 AGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCAT 1920 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||||| ||| || ||||| Sbjct 1919 AAGGGTTTTTATGAAAATCTGCAT 1896 >seq19457 Length=14611 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| || ||||||||||| || || || | || | |||||||| || Sbjct 1949 TGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCA-TCTTCGAGGTG 2007 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 2008 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2067 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || ||||| || | ||| | || | Sbjct 2068 AGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCAT 2127 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||||| ||| || ||||| Sbjct 2128 AAGGGTTTTTATGAAAATCTGCAT 2151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494950869588800