Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq260 201 1e-46 seq37793 129 6e-25 seq3013 129 6e-25 seq80406 93.3 4e-14 >seq260 Length=805401 Score = 201 bits (222), Expect = 1e-46 Identities = 413/607 (68%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 13857 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 13916 ||||| || ||| || ||| | ||||| || | |||||||||||| | |||||||| Sbjct 242855 TGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGC--ATAAGTTCA 242912 Query 13917 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAAT 13976 || ||||| || | || |||| || ||||| ||| || | ||| ||||||| ||| | Sbjct 242913 TTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAGAA 242972 Query 13977 GACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT 14036 || || |||||||| ||| | || ||||||||| | | || | | |||| || | | Sbjct 242973 GAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACATTCTACATAGGTA 243032 Query 14037 GCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 14096 || | ||||| | ||||| | | ||| || | | || || | | || |||| Sbjct 243033 GCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTTGAAACAAGCCATC 243092 Query 14097 GTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATA 14156 ||||||| ||||| || | | ||||| | ||||| | | || |||||| |||||||| Sbjct 243093 ATTTCAATGGCATTGAAGAGAAATTCCCTTTCTTT-GGAATTTTAATGTAAATATCAATA 243151 Query 14157 AGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCAT 14216 || | ||||| |||||||| ||| |||||||||| || || || || ||||| || || Sbjct 243152 AGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 243211 Query 14217 CTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATA 14276 | ||||| | || || | | ||||| | ||||||||| ||| ||||| Sbjct 243212 CAGGCTTCTGTAATCTGACTTTTCTGGCTAAATCGCTTCACCAAATTTTTATTTACTATG 243271 Query 14277 CCATCACTAGCTGCAAAAAATGCCA----ATATGTTTTTAATAAAGTATTGCTCTTCATT 14332 |||||||| ||||||| || |||| ||| | | |||| ||| ||| ||| Sbjct 243272 CCATCACTCACTGCAAAGAAAGCCAGAACATAGGAT----GTAAAATATCTCTCCTCAGG 243327 Query 14333 GTTGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAA 14391 || | || ||| | | || ||||| ||||||| || | || ||| ||||| Sbjct 243328 TTTCAAGCCTTCCCAGTGCTGA-GTGTCCTTGTAAAGATCCACCACCTCGGCTGACCAAA 243386 Query 14392 AACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAAT---ATAGGAAAAA 14448 | ||| | ||||| ||||||||| ||| || || ||| ||| |||||||| | Sbjct 243387 AGGAAGCTTCGGCTTTCTTATACATTTGCCAAATATC---ATAGAATGGAATAGGAAAGA 243443 Query 14449 CTACAAA 14455 ||||| Sbjct 243444 TGACAAA 243450 >seq37793 Length=6272 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 4349 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 4408 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 4409 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 4468 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 4469 CTACAACACGTTCTCC 4484 >seq3013 Length=259453 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 181822 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 181881 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 181882 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 181941 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 181942 CTACAACACGTTCTCC 181957 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 180242 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 180301 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| |||||||| ||||| |||||| Sbjct 180302 TCCAGTGAAATATTCTCCATAAAGTCAAAGGGATTT 180337 >seq80406 Length=1056 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/103 (81%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 |||| ||||||| | | |||||| ||||||||||| | |||||||||||||| |||| Sbjct 855 CCTT-TCTTTAGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTA 797 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 |||||||||| || || || || ||||| || || | |||||| Sbjct 796 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTC 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478651526347600