Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq260 183 3e-41 seq37793 123 2e-23 seq3013 123 2e-23 seq80406 96.9 3e-15 seq671 82.4 7e-11 >seq260 Length=805401 Score = 183 bits (202), Expect = 3e-41 Identities = 409/608 (67%), Gaps = 21/608 (3%) Strand=Plus/Plus Query 13645 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 13704 ||||| || ||| || ||| | ||||| || | |||||||||||| | |||||||| Sbjct 242855 TGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGC--ATAAGTTCA 242912 Query 13705 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAAT 13764 || ||||| || | || |||| || ||||| ||| || | ||| ||||||| || | Sbjct 242913 TTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAGAA 242972 Query 13765 GATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGAT 13824 || || |||||||| ||| | || ||||||||| | | || | | |||| || | | Sbjct 242973 GAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACATTCTACATAGGTA 243032 Query 13825 GCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 13884 || | ||||| ||||| | | ||| || | | || || | | || |||| Sbjct 243033 GCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTTGAAACAAGCCATC 243092 Query 13885 GTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATA 13944 |||| || |||||||| | | |||| | ||||| | | || |||||| |||||||| Sbjct 243093 ATTTCAATGGCATTGAAGAGAAATTCCCTTTCTTT-GGAATTTTAATGTAAATATCAATA 243151 Query 13945 AGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACAT 14004 || | ||||| |||||||| ||| ||||||| || || || || || ||||| ||||| Sbjct 243152 AGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 243211 Query 14005 CTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATA 14064 | ||||||| || | | | ||||| | |||| |||| ||| || || Sbjct 243212 CAGGCTTCTGTAATCTGACTTTTCTGGCTAAATCGCTTCACCAAATTTTTATTTACTATG 243271 Query 14065 CCATCACTAGCTGCAAAAAATGCCA----ATATGTTTTTAATAAAGTATTGCTCTTCATT 14120 |||||||| ||||||| || |||| ||| | | |||| ||| ||| ||| Sbjct 243272 CCATCACTCACTGCAAAGAAAGCCAGAACATAGGAT----GTAAAATATCTCTCCTCAGG 243327 Query 14121 GTTGAGTTTTTTCCAATCGGCTAA--ATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14178 || | || ||| | ||| | ||||| ||||||| || | || ||| |||| Sbjct 243328 TTTCAAGCCTTCCCAGT--GCTGAGTGTCCTTGTAAAGATCCACCACCTCGGCTGACCAA 243385 Query 14179 AAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAAT---ATAGGAAAA 14235 || ||| | ||||| ||||||||| ||| || || ||| ||| |||||||| Sbjct 243386 AAGGAAGCTTCGGCTTTCTTATACATTTGCCAAATATC---ATAGAATGGAATAGGAAAG 243442 Query 14236 ACTACAAA 14243 | ||||| Sbjct 243443 ATGACAAA 243450 >seq37793 Length=6272 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 4349 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 4408 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| ||||| || ||||| ||||| | Sbjct 4409 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 4468 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 4469 CTACAACACGTTCTCC 4484 >seq3013 Length=259453 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 181822 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 181881 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| ||||| || ||||| ||||| | Sbjct 181882 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 181941 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 181942 CTACAACACGTTCTCC 181957 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 180242 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 180301 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| |||||||| || || |||||| Sbjct 180302 TCCAGTGAAATATTCTCCATAAAGTCAAAGGGATTT 180337 >seq80406 Length=1056 Score = 96.9 bits (106), Expect = 3e-15 Identities = 85/105 (81%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 |||| ||||||| | | |||||| ||||||||||| | |||||||||||||| |||| Sbjct 855 CCTT-TCTTTAGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTA 797 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||||||| || || || || || ||||| ||||| | |||||||| Sbjct 796 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTG 752 >seq671 Length=569411 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 11122 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGTG 11181 |||||||| | |||||||| |||| |||||| | |||| |||||| |||| Sbjct 254512 CATCTAAAATTCGAACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATAAGCTGTG 254453 Query 11182 CCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACTATTATTAATAAATATAACTC 11241 | | |||||| || |||| | | ||| | | ||| | | ||||| | || ||| | Sbjct 254452 CAATTCGATCACCCTTTTTGACTTCAAACATTTCTTTGCCAAAATTAAACAGTACAACAC 254393 Query 11242 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11291 ||| || || || |||||||||||||| || || |||||| ||||||| Sbjct 254392 CAACATTTCCTCTGTAATCTTCATCTATGACACCAGCTCCTACATCTATG 254343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477514882626960