Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq260 134 1e-26 seq1401 111 1e-19 seq80406 95.1 1e-14 seq18778 84.2 2e-11 >seq260 Length=805401 Score = 134 bits (148), Expect = 1e-26 Identities = 455/703 (65%), Gaps = 23/703 (3%) Strand=Plus/Plus Query 12889 AAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTT--TTCGAA 12946 |||||| || || ||||||| |||||||| |||||||| || || ||||| | | Sbjct 242608 AAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAAGGGATTAGCTACTCT 242667 Query 12947 CAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTAC 13006 || | || || | || | ||| || || || || | || | | ||||| Sbjct 242668 GAAAACC--TTGCTAAAACCCAGTTCCAGCCTAAACCTTTCTTCCACGACTTAAATGTAG 242725 Query 13007 TGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAG 13066 || |||||||| ||||||| || || | || ||||||| || || | | || Sbjct 242726 TGCTTCATTAAGGTGAAGTTCATCCCAATGAGCTTCACAGGCAAGGCCTCCCTAAGGAAC 242785 Query 13067 tttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGA 13126 | | |||||| | || | | ||| ||| ||| | | | | |||| ||| Sbjct 242786 TCCTGTTCTATCCTTGCAGCATTGGTAATTATTTCTTTCACTCTCTGCTCTGATGT---- 242841 Query 13127 TTTGA-TAGA---TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCT 13182 |||| |||| || || ||| | | || ||| | ||||||||||| || |||||||| Sbjct 242842 TTTGTGTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCT 242901 Query 13183 ACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAA 13242 | || || || || ||||| || || || |||| || |||| ||| || | ||| || Sbjct 242902 GC--ATAAGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAA 242959 Query 13243 TATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCT 13302 ||| | ||| | ||||| ||||| || ||| |||| ||||| ||| | | || | | Sbjct 242960 TATTGATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACA 243019 Query 13303 TTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTT 13362 ||| |||| ||| | ||| | | ||||| | || ||| | |||| | || Sbjct 243020 TTCTACATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTT 243079 Query 13363 AACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAAT 13422 | || ||| |||| || || || || | | | || |||| || | || | Sbjct 243080 GAAACAAGCCATCATTTCAATGGCATTGAAGAGAAA-----TTCCCTTTCTTTGGAATTT 243134 Query 13423 ATAAGTATCTATCAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTT 13478 | ||| |||||||||| ||||| ||||| ||||| | |||||||| || |||| Sbjct 243135 TAATGTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTT 243194 Query 13479 GGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTA 13538 |||| ||||| ||||| | || |||| | |||| || | ||||| | | | Sbjct 243195 GGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGACTTTTCTGGCTAAATCGCTTCACCA 243254 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581 | |||| || ||||| || ||||| | ||||| ||||| || Sbjct 243255 AATTTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAG 243297 >seq1401 Length=405806 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 92090 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGTCCTCTCTTCT 92149 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || ||||||||||| || ||||| | Sbjct 92150 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 92209 Query 13293 CTATCAACCTTTCACC 13308 | | | |||||| || Sbjct 92210 CCACAATCCTTTCCCC 92225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 || ||||||||||| |||||||| |||||||||||||| ||| || |||||||| || Sbjct 86336 AATAATCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAATGCAATTCATTCCAATG 86395 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAA 13065 | ||||||| |||||||||||||| Sbjct 86396 AGGCCAACAGGCAAGGCTTCTGTTAAAAA 86424 >seq80406 Length=1056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 13404 tttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATAT 13463 |||| ||| ||| ||| |||||||| || | | ||||||||||| ||||| || | Sbjct 853 TTTCTTTAGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 794 Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||||||| || |||||||| ||||| ||||| | ||| |||| ||||||||||| Sbjct 793 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGAACTTC 739 >seq18778 Length=15734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 || ||||||||||| |||||||| |||||||||||||| ||| || |||||||| || Sbjct 5159 AATAATCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAATGCAATTCATTCCAATG 5100 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAA 13065 | ||||||| |||||||||||||| Sbjct 5099 AGGCCAACAGGCAAGGCTTCTGTTAAAAA 5071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| |||||| Sbjct 7876 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 7817 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 7816 ATAAAATCAAATGGATTTT 7798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430039485122628