Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq260 134 1e-26
seq1401 111 1e-19
seq80406 95.1 1e-14
seq18778 84.2 2e-11
>seq260
Length=805401
Score = 134 bits (148), Expect = 1e-26
Identities = 455/703 (65%), Gaps = 23/703 (3%)
Strand=Plus/Plus
Query 12889 AAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTT--TTCGAA 12946
|||||| || || ||||||| |||||||| |||||||| || || ||||| | |
Sbjct 242608 AAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAAGGGATTAGCTACTCT 242667
Query 12947 CAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTAC 13006
|| | || || | || | ||| || || || || | || | | |||||
Sbjct 242668 GAAAACC--TTGCTAAAACCCAGTTCCAGCCTAAACCTTTCTTCCACGACTTAAATGTAG 242725
Query 13007 TGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAG 13066
|| |||||||| ||||||| || || | || ||||||| || || | | ||
Sbjct 242726 TGCTTCATTAAGGTGAAGTTCATCCCAATGAGCTTCACAGGCAAGGCCTCCCTAAGGAAC 242785
Query 13067 tttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGA 13126
| | |||||| | || | | ||| ||| ||| | | | | |||| |||
Sbjct 242786 TCCTGTTCTATCCTTGCAGCATTGGTAATTATTTCTTTCACTCTCTGCTCTGATGT---- 242841
Query 13127 TTTGA-TAGA---TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCT 13182
|||| |||| || || ||| | | || ||| | ||||||||||| || ||||||||
Sbjct 242842 TTTGTGTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCT 242901
Query 13183 ACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAA 13242
| || || || || ||||| || || || |||| || |||| ||| || | ||| ||
Sbjct 242902 GC--ATAAGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAA 242959
Query 13243 TATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCT 13302
||| | ||| | ||||| ||||| || ||| |||| ||||| ||| | | || | |
Sbjct 242960 TATTGATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACA 243019
Query 13303 TTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTT 13362
||| |||| ||| | ||| | | ||||| | || ||| | |||| | ||
Sbjct 243020 TTCTACATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTT 243079
Query 13363 AACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAAT 13422
| || ||| |||| || || || || | | | || |||| || | || |
Sbjct 243080 GAAACAAGCCATCATTTCAATGGCATTGAAGAGAAA-----TTCCCTTTCTTTGGAATTT 243134
Query 13423 ATAAGTATCTATCAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTT 13478
| ||| |||||||||| ||||| ||||| ||||| | |||||||| || ||||
Sbjct 243135 TAATGTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTT 243194
Query 13479 GGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTA 13538
|||| ||||| ||||| | || |||| | |||| || | ||||| | | |
Sbjct 243195 GGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGACTTTTCTGGCTAAATCGCTTCACCA 243254
Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581
| |||| || ||||| || ||||| | ||||| ||||| ||
Sbjct 243255 AATTTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAG 243297
>seq1401
Length=405806
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || |||||||| |||| || |
Sbjct 92090 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGTCCTCTCTTCT 92149
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || ||||| || || ||||||||||| || ||||| |
Sbjct 92150 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 92209
Query 13293 CTATCAACCTTTCACC 13308
| | | |||||| ||
Sbjct 92210 CCACAATCCTTTCCCC 92225
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036
|| ||||||||||| |||||||| |||||||||||||| ||| || |||||||| ||
Sbjct 86336 AATAATCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAATGCAATTCATTCCAATG 86395
Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAA 13065
| ||||||| ||||||||||||||
Sbjct 86396 AGGCCAACAGGCAAGGCTTCTGTTAAAAA 86424
>seq80406
Length=1056
Score = 95.1 bits (104), Expect = 1e-14
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 13404 tttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATAT 13463
|||| ||| ||| ||| |||||||| || | | ||||||||||| ||||| || |
Sbjct 853 TTTCTTTAGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 794
Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
||||||| || |||||||| ||||| ||||| | ||| |||| |||||||||||
Sbjct 793 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGAACTTC 739
>seq18778
Length=15734
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036
|| ||||||||||| |||||||| |||||||||||||| ||| || |||||||| ||
Sbjct 5159 AATAATCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAATGCAATTCATTCCAATG 5100
Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAA 13065
| ||||||| ||||||||||||||
Sbjct 5099 AGGCCAACAGGCAAGGCTTCTGTTAAAAA 5071
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| ||||||
Sbjct 7876 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 7817
Query 12923 ATAAAATCGAAAGGATTTT 12941
|||||||| || |||||||
Sbjct 7816 ATAAAATCAAATGGATTTT 7798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430039485122628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |