Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq8862 145 5e-30 seq17702 111 1e-19 seq12448 111 1e-19 seq40139 107 1e-18 seq131279 96.9 2e-15 >seq8862 Length=84653 Score = 145 bits (160), Expect = 5e-30 Identities = 283/412 (69%), Gaps = 5/412 (1%) Strand=Plus/Plus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 |||||||| |||| || | || |||||| | |||||| | || | |||| |||||| Sbjct 48720 GGGAAAGGTCCTGGT-TCTCGCTGAAGCTGAATTTTCAGCCGCTCAATGTGAGTCAGGTA 48778 Query 25448 GACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGC 25507 | || || ||||||| | | || ||||| || || || | || || || | || || Sbjct 48779 AATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCTGCAGGCCCGTGA-GTGCGC 48837 Query 25508 CATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTC 25567 |||||||||||||| || ||||||| |||||| || || || || | ||||||| Sbjct 48838 GATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAGGCACGCCCAGGCCCATGT- 48896 Query 25568 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCG-TCGCTCACGTAAAACTGACAC 25626 | || |||||||||| ||||| || || ||||| || || || | ||| | ||| || Sbjct 48897 CTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACT-ATGTAGAGCTGGCAG 48955 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | || | |||||||| || || || || | ||||| || ||||| || ||| | Sbjct 48956 AGGGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCATACATG 49015 Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746 ||||| | ||||| ||||| ||| |||| || ||||||||||| || Sbjct 49016 ATGATTCTTCTGTCGTCTGGATTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCT 49075 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAAT 25798 || || | || || | |||| |||| || |||| ||||| || |||| Sbjct 49076 ACTCCTTTACCTGAACAATCTGAATTCATATCTTTGTATTCTGCCCCNAAAT 49127 >seq17702 Length=18075 Score = 111 bits (122), Expect = 1e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831 |||| || ||||| ||||| || |||| |||||||||||| || || || || || |||| Sbjct 9630 TCATATCTGTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGT 9571 Query 25832 CTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 | || ||| | ||| || ||| | |||| |||||||| |||||| ||||| | Sbjct 9570 CCCCTTCTACTCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCAT 9511 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||||||| || ||||| ||||| ||||| | |||||||| || Sbjct 9510 CCCAGATCTTCACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGGATCC 9462 Score = 107 bits (118), Expect = 1e-18 Identities = 118/156 (76%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || || |||| || |||||||||||||| || |||||||||||||| || || Sbjct 13252 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 13193 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || |||| ||||||| | || ||||||||||| ||||| || || ||||| ||| Sbjct 13192 ACGCCGAGGCCCATGT-CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 13134 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAG 25646 |||||| ||||| || | || | ||||||||| || Sbjct 13133 CACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAG 13098 >seq12448 Length=43075 Score = 111 bits (122), Expect = 1e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831 |||| || ||||| ||||| || |||| |||||||||||| || || || || || |||| Sbjct 12945 TCATATCTGTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGT 13004 Query 25832 CTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 | || ||| | ||| || ||| | |||| |||||||| |||||| ||||| | Sbjct 13005 CCCCTTCTACTCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCAT 13064 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||||||| || ||||| ||||| ||||| | |||||||| || Sbjct 13065 CCCAGATCTTCACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGGATCC 13113 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/156 (74%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || || |||| || |||||||||||||| || |||||||||||||| || || Sbjct 9231 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 9290 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || |||| ||||||| | || ||||||||||| ||||| || || ||||| | | Sbjct 9291 ACGCCGAGGCCCATGT-CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCAC 9349 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAG 25646 |||||| || || || | || | ||||||||| || Sbjct 9350 CACGTAGAATTGGCAGAGGGCATGGCACGGAGGCAG 9385 >seq40139 Length=6180 Score = 107 bits (118), Expect = 1e-18 Identities = 118/156 (76%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || || |||| || |||||||||||||| || |||||||||||||| || || Sbjct 1008 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 949 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || |||| ||||||| | || ||||||||||| ||||| || || ||||| ||| Sbjct 948 ACGCCGAGGCCCATGT-CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 890 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAG 25646 |||||| ||||| || | || | ||||||||| || Sbjct 889 CACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAG 854 >seq131279 Length=636 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 25864 TCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 25923 ||||||||||||| ||||| ||||| ||||||||||| || ||||| ||||||| | Sbjct 43 TCCAAAAAGTCTCGAGAACCGTTGGCATCCCAGATCTTCACTCCCTTGGAAGAGAGCTTT 102 Query 25924 TTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 25961 || | ||||||||| | | ||| |||||||||||||| Sbjct 103 TTCGTGTTTGTGGATCTTTTGATAAACCACAGCAGCTC 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339393437817522