Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq3344 134 2e-26 >seq3344 Length=239081 Score = 134 bits (148), Expect = 2e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||||||||||||||| || | Sbjct 170967 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGAGGAGGTGA 170908 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || || ||||| || ||| || || |||||||| ||||| || | Sbjct 170907 TGCCCCAGGCTGAGAACCACGACCCAGACATCAAGGAACATGTGAACTCCCTGGGAGAAA 170848 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || |||||||| ||||| Sbjct 170847 AACTGAAGACCCTCAGGCT 170829 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||||||||||||||| |||||||| ||||| ||||| | Sbjct 168578 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTTATCAACTACA 168519 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 |||||| |||||||| ||||| || Sbjct 168518 TAGAAGACTACATGACAATGAAGAT 168494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546150922128640