Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1215 174 2e-38 seq748 104 3e-17 >seq1215 Length=434531 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| ||| || |||||||||||| || ||||| || ||||| |||||| Sbjct 118811 GTCTGGAACAACCTTTCATCGTCCCATTCTGGATGCTCCCGTTTAAGCACATCACACACT 118870 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| |||||||| || || ||||||||||||||||||||||| ||||| Sbjct 118871 CTGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATGAGACCAGGCACCAGACCAAAG 118930 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | ||| || || | || ||||||||||| | Sbjct 118931 ACCTCCTGTCCCACAGCAAACCGCAGGTGTTCAGGGACGTTAGGGGGATAGATCATCTCT 118990 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| || || | || || ||||| |||| Sbjct 118991 ACCTGAGTATCTTTGACTGTGGGAGGGTATACCTCTCCATCAATTATCT 119039 Score = 123 bits (136), Expect = 4e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| ||||| ||||| ||||| || || ||||| ||| ||| | ||| Sbjct 121191 CTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCGATGATGATCTGTCTTGAAA 121250 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||| || |||||||||||| |||| || |||||||| | || |||||||||||||| Sbjct 121251 AACTGATGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATCA 121310 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAG 10204 || | || | || | |||||| |||||||||||| | | || ||| || || Sbjct 121311 GGGATAAACTTTCTTCTTAGAAGAAATTTTTCCACAACCTCTTTCGAATCAGGAAG 121366 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | ||||| || || || | || || ||||| || | || | | Sbjct 121867 TCACCTTTCACACCCATGGGAGTCGGGCAGTCATCAGCCACAGGAGGAAGGACTCTGGTG 121926 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||||||| ||||| |||||||||||| ||| | |||| | | ||||| | Sbjct 121927 TAATAGGAGAGATTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTGCACATTGTAAGTT 121986 Query 10407 GGAGGGCTGTCAATCAAATCGGATCT 10432 || || || |||||||||| ||||| Sbjct 121987 GGTGGACTCTCAATCAAATGTGATCT 122012 >seq748 Length=543513 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || || || || ||||| || |||||||| | || || |||||| ||| Sbjct 491201 AAGCCCATCTCGCCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGATTC 491142 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| || ||||||||||| |||||||| | ||| | || ||||| || |||||| Sbjct 491141 CCTAGGAGACCCTTGAGGGAAAATGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATG 491082 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| || || |||||| | || | || | | | ||||||| || || |||||| Sbjct 491081 GAGTTTGGTAGGCACTTTTCAAGCAGCAGCCCAGGGAAGAACTCCAAGGCATCAATGTCT 491022 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || | | | || ||||| || ||||| |||||| Sbjct 491021 CCATATAACTCTTCCAACTCAGCAGCCATCTCCTTCTCTCCT 490980 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/141 (76%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || || ||||| |||| | || |||||| | ||||| || |||| | ||| Sbjct 480275 GTACTCACTCCATGGCCCAAGGCCTTGGTGAAGCCAGGGCCCATCTTGCCAGA--AGTTT 480218 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || |||||||| ||||| ||||| |||| ||||||||||| | |||||||||||||| Sbjct 480217 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCCTGGG 480158 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 |||| || |||| |||||| Sbjct 480157 GATCAGGTATGAACTTCCTCC 480137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706934923488160