Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq1215 174 2e-38
seq748 104 3e-17
>seq1215
Length=434531
Score = 174 bits (192), Expect = 2e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| ||| || |||||||||||| || ||||| || ||||| ||||||
Sbjct 118811 GTCTGGAACAACCTTTCATCGTCCCATTCTGGATGCTCCCGTTTAAGCACATCACACACT 118870
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||||||||||| |||||||| || || ||||||||||||||||||||||| |||||
Sbjct 118871 CTGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATGAGACCAGGCACCAGACCAAAG 118930
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| | |||| | ||| || || | || ||||||||||| |
Sbjct 118931 ACCTCCTGTCCCACAGCAAACCGCAGGTGTTCAGGGACGTTAGGGGGATAGATCATCTCT 118990
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| ||||||||| | ||| || || | || || ||||| ||||
Sbjct 118991 ACCTGAGTATCTTTGACTGTGGGAGGGTATACCTCTCCATCAATTATCT 119039
Score = 123 bits (136), Expect = 4e-23
Identities = 133/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088
||||||||||| ||||| ||||| ||||| || || ||||| ||| ||| | |||
Sbjct 121191 CTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCGATGATGATCTGTCTTGAAA 121250
Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148
||||| || |||||||||||| |||| || |||||||| | || ||||||||||||||
Sbjct 121251 AACTGATGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATCA 121310
Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAG 10204
|| | || | || | |||||| |||||||||||| | | || ||| || ||
Sbjct 121311 GGGATAAACTTTCTTCTTAGAAGAAATTTTTCCACAACCTCTTTCGAATCAGGAAG 121366
Score = 96.9 bits (106), Expect = 5e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | ||||| || || || | || || ||||| || | || | |
Sbjct 121867 TCACCTTTCACACCCATGGGAGTCGGGCAGTCATCAGCCACAGGAGGAAGGACTCTGGTG 121926
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|||||||||||||| ||||| |||||||||||| ||| | |||| | | ||||| |
Sbjct 121927 TAATAGGAGAGATTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTGCACATTGTAAGTT 121986
Query 10407 GGAGGGCTGTCAATCAAATCGGATCT 10432
|| || || |||||||||| |||||
Sbjct 121987 GGTGGACTCTCAATCAAATGTGATCT 122012
>seq748
Length=543513
Score = 104 bits (114), Expect = 3e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| |||| || || || || ||||| || |||||||| | || || |||||| |||
Sbjct 491201 AAGCCCATCTCGCCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGATTC 491142
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
| | ||| || ||||||||||| |||||||| | ||| | || ||||| || ||||||
Sbjct 491141 CCTAGGAGACCCTTGAGGGAAAATGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATG 491082
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
| ||| || || |||||| | || | || | | | ||||||| || || ||||||
Sbjct 491081 GAGTTTGGTAGGCACTTTTCAAGCAGCAGCCCAGGGAAGAACTCCAAGGCATCAATGTCT 491022
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
|| || | | | || ||||| || ||||| ||||||
Sbjct 491021 CCATATAACTCTTCCAACTCAGCAGCCATCTCCTTCTCTCCT 490980
Score = 96.9 bits (106), Expect = 5e-15
Identities = 107/141 (76%), Gaps = 4/141 (3%)
Strand=Plus/Minus
Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083
|| || || ||||| |||| | || |||||| | ||||| || |||| | |||
Sbjct 480275 GTACTCACTCCATGGCCCAAGGCCTTGGTGAAGCCAGGGCCCATCTTGCCAGA--AGTTT 480218
Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143
| || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||||||||
Sbjct 480217 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCCTGGG 480158
Query 10144 GATCGGGAGTGAAGGTCCTCC 10164
|||| || |||| ||||||
Sbjct 480157 GATCAGGTATGAACTTCCTCC 480137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 706934923488160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |