Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1029 122 8e-23 seq4376 91.5 1e-13 seq633 84.2 2e-11 >seq1029 Length=469353 Score = 122 bits (134), Expect = 8e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || ||||| |||| |||||||||| ||| || || || || | Sbjct 371598 AAAAACTTAGACACCACCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGAAT 371657 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || ||| ||| ||||||||||| || ||||||| || || || Sbjct 371658 GTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTG 371717 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || || || || || || ||||| | || || ||||||||| | | ||||| Sbjct 371718 CTGGTCAGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTC 371777 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | ||||| || | |||||||| || || || || || ||||| ||||||||||| Sbjct 371778 ACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 371837 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| |||||| || || || || || | ||| || || | Sbjct 372751 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 372810 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || | ||||| || || ||||| || || || Sbjct 372811 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 372870 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| |||||| | | ||||| Sbjct 372871 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 372930 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||||||||||||||| Sbjct 372931 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 372977 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| |||||| || || || || || | ||| || || | Sbjct 371839 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 371898 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || | ||||| || || ||||| || || || Sbjct 371899 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 371958 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| | | |||||| | | ||||| Sbjct 371959 ATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 372018 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 372019 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372065 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| |||||| || || || || || | ||| || || | Sbjct 372067 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 372126 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || | ||||| || || ||||| || || || Sbjct 372127 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 372186 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| | | |||||| | | ||||| Sbjct 372187 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 372246 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 372247 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372293 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| |||||| || || || || || | ||| || || | Sbjct 372295 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 372354 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || | ||||| || || ||||| || || || Sbjct 372355 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 372414 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| | | |||||| | | ||||| Sbjct 372415 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 372474 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 372475 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372521 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| |||||| || || || || || | ||| || || | Sbjct 372523 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 372582 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || | ||||| || || ||||| || || || Sbjct 372583 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 372642 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| | | |||||| | | ||||| Sbjct 372643 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 372702 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 372703 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372749 >seq4376 Length=192284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAA-AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG 94850 || |||||| ||| | || ||| || | ||| || | ||||||||| | ||| Sbjct 63450 TCTCAACAC-AAGAGGAAGAGTCGACTTCTTCTGAATGTTATAATC----AAAGTACATC 63504 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| ||||| || || || ||||| | | |||||||||||| |||||||| ||||| | Sbjct 63505 CATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCT 63564 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | || || ||||| || || | || || | | | || | ||||| ||| Sbjct 63565 TATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGTTCAATGTCAAGAATGA 63624 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||| ||||| ||||| | || |||||||| Sbjct 63625 TGGTCTTTCCCGTAAGGGTTTTTATGAAAATCTGCAT 63661 >seq633 Length=582679 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| || || || || |||||||| Sbjct 204163 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTT 204222 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || ||| |||||| | | || || || | ||||| Sbjct 204223 ATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGAT 204282 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || ||||| ||||||||||| Sbjct 204283 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 204318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447285268169040