Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6933 149 1e-31 seq4469 145 1e-30 seq13605 136 6e-28 seq2492 136 6e-28 seq2430 136 6e-28 seq352 136 6e-28 seq2595 123 4e-24 >seq6933 Length=119175 Score = 149 bits (164), Expect = 1e-31 Identities = 181/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || |||||||||||||||| ||||||||||| || | Sbjct 102427 CGCTAAGCGCCACCGCAAGGTC-CTGAGAGATAACATCCAAGGCATCACCAAGCCCGCAA 102485 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| || || || |||||||| |||| || | | ||||| |||| Sbjct 102486 TCCGGCGTCTCGCTCGGCGCGGAGGTGTCAAGCGGATCTCAGGTCTCATTTATGAGGAGA 102545 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| ||| || | || || || ||| || | Sbjct 102546 CCCGGGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATTCGGGACGCAGTCACCTACACGG 102605 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | || || || | || || |||| Sbjct 102606 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAAG 102665 Query 16671 GCCG 16674 | || Sbjct 102666 GACG 102669 >seq4469 Length=286674 Score = 145 bits (160), Expect = 1e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 89859 CGCTAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 89801 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 89800 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 89741 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | ||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 89740 CTCGCGGGGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGG 89681 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||||||| ||||||| | |||||||| | || || || | Sbjct 89680 AGCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTATGCGCTCAAGCGCCAGG 89621 Query 16671 GCCG 16674 | || Sbjct 89620 GACG 89617 Score = 131 bits (144), Expect = 3e-26 Identities = 187/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||||||||| || || Sbjct 164985 GCCAAGCGCCACCGCAAGGTC-CTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 165043 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 165044 CCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 165103 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 165104 CCGCGGGGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 165163 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| ||||||| | ||||| || | || || || || Sbjct 165164 GCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 165223 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 165224 ACGCACCCTCTACGGTTTCGG 165244 Score = 98.7 bits (108), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| ||| | |||| || || |||||||| || ||||||||||| || | Sbjct 170804 CGCCAAGCGTCACTGCA-AGGTCTTACGCGACAACATCCAGGGCATCACCAAGCCCGCCA 170746 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | || ||||| |||||||| |||||||| |||| | || |||| || |||| Sbjct 170745 TCCGGTGCCTCGCTCGGCGTGGTGGCGTCAAGCGCATCTCCAGTCTGATCTACGAGGAGA 170686 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 170685 CCCGCGGGGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCAGTCACCTACACGG 170626 Query 16611 AGCACGCTAAACG 16623 | ||||| || || Sbjct 170625 AACACGCCAAGCG 170613 >seq13605 Length=34519 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 2928 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2986 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | || ||||| |||||||| |||||||| |||| | || |||| || |||| Sbjct 2987 TCCGGTGCCTCGCTCGGCGTGGTGGCGTCAAGCGCATCTCCAGTCTGATCTACGAGGAGA 3046 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 3047 CCCGCGGGGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGG 3106 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||||||| ||||||| | ||||| || | || || || | Sbjct 3107 AGCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 3166 Query 16671 GCCG 16674 | || Sbjct 3167 GACG 3170 >seq2492 Length=292778 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 171342 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 171283 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| ||||| || || ||||||||| |||| || | |||| || |||| Sbjct 171282 CCGGCGCCTGGCCCGTCGCGGCGGCGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 171223 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 171222 CCGCGGGGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 171163 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| ||||||| | ||||| || | || || || || Sbjct 171162 GCACGCCAAGCGCAAGACTGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 171103 Query 16672 CCG 16674 || Sbjct 171102 ACG 171100 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 158640 CGCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 158699 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 158700 CCGGCGGCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 158759 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 158760 CCGCGGGGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 158819 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| ||||||| | ||||| || | || || || || Sbjct 158820 GCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 158879 Query 16672 CCG 16674 || Sbjct 158880 ACG 158882 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || || |||||||| || | Sbjct 122551 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCA 122609 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 122610 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 122669 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 122670 CCCGCGGGGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGG 122729 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||||||| ||||||| | ||||| || | || || || | Sbjct 122730 AGCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 122789 Query 16671 GCCG 16674 | || Sbjct 122790 GACG 122793 >seq2430 Length=297608 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 30422 CGCTAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 30480 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 30481 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 30540 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 30541 CCCGCGGGGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGG 30600 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||||||| ||||||| | ||||| || | || || || | Sbjct 30601 AGCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 30660 Query 16671 GCCG 16674 | || Sbjct 30661 GACG 30664 >seq352 Length=713792 Score = 136 bits (150), Expect = 6e-28 Identities = 189/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 362671 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 362729 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 362730 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 362789 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | ||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 362790 CTCGCGGGGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGG 362849 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||||||| ||||||| | ||||| || | || || || | Sbjct 362850 AGCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 362909 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | || || ||||| Sbjct 362910 GACGCACTCTCTACGGGTTTGG 362931 Score = 129 bits (142), Expect = 9e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||||||||| || || Sbjct 315455 GCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 315397 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 315396 CCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 315337 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 315336 CCGCGGGGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 315277 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| ||||||| | ||||| || | || || || || Sbjct 315276 GCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 315217 Query 16672 CCG 16674 || Sbjct 315216 ACG 315214 Score = 122 bits (134), Expect = 1e-23 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 334864 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 334922 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | | || || |||| Sbjct 334923 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATTTACGAGGAGA 334982 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | || || ||| ||| |||| || || || ||| || | Sbjct 334983 CCCGCGGCGTCCTCAAGGTGTTTCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGG 335042 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||||||| ||||||| | ||||| || | || || || | Sbjct 335043 AGCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 335102 Query 16671 GCCG 16674 | || Sbjct 335103 GACG 335106 >seq2595 Length=286104 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || ||||| |||||||| || ||||| Sbjct 71776 CTGCGTGACAACATCCAGGGCATTACGAAGCCTGCCATCCGCCGTCTGGCCCGCCGTGGG 71717 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| || | || | || |||| Sbjct 71716 GGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACACGGGGCGTGCTCAAAGTCTTT 71657 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||||| | || ||||||||||| || || ||||| ||| Sbjct 71656 CTGGAGAACGTGATCCGCGATGCGGTGACTTACACCGAGCACGCCAAGCGCAAGACGGTC 71597 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | || || ||| ||||||| || ||||| Sbjct 71596 ACGGCCATGGACGTGGTGTACGCACTGAAACGCCAGGGCCG 71556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78911069093202