Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq18778 95.1 1e-14 seq12442 89.7 5e-13 >seq18778 Length=15734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| | ||||| | | | Sbjct 7938 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCCGCCATAACTGCAAAAC 7879 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || ||||| || || || || Sbjct 7878 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 7819 Query 21246 CCATAAAATCAAATGGATTTTC 21267 |||||||||||||||||||||| Sbjct 7818 CCATAAAATCAAATGGATTTTC 7797 >seq12442 Length=43104 Score = 89.7 bits (98), Expect = 5e-13 Identities = 92/120 (77%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 130658 TTCTTCC---GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCC 130714 ||||||| ||||||| | | ||||| | ||| | ||||| | ||| || || | || Sbjct 11787 TTCTTCCATGGTTTCAAACTGAGCAAGACTGGCTTCTAATGAGGCACAGAAGGTCTGGCT 11846 Query 130715 AAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCA 130774 || ||||||||| ||| |||||||||||| ||||| || || ||||||||||||||| Sbjct 11847 GAAAGTCCAATTTCTTGCATCTTCAGAAAAATAAAAACACTTGCTTCCAAATCCAATCCA 11906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530707254497360