Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq633 93.3 3e-14 seq1029 87.8 1e-12 >seq633 Length=582679 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 16739 GTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCC 16798 |||||||| || || ||||||||||| | | || | | || |||| || ||||| Sbjct 204122 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 204181 Query 16799 GCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCT 16856 ||| | || |||| ||| ||||| || | ||| ||||| || || || || || Sbjct 204182 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGC--CT 204239 Query 16857 TCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCG 16916 |||| | | | ||||| | ||||||| ||||| ||||||||| || |||||||| | Sbjct 204240 TCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGG 204299 Query 16917 TTTTGACAAAAATCTGCAT 16935 | || || || |||||||| Sbjct 204300 TCTTCACGAAGATCTGCAT 204318 >seq1029 Length=469353 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| |||| |||||||| || || ||||||||||| | Sbjct 372750 CCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 372809 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || || | || | || ||| ||||| || Sbjct 372810 CAGGGTGCGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGG 372869 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||| | |||||| Sbjct 372870 GATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCG 372927 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| || |||||||| || || ||||| ||||||||| Sbjct 372928 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 372978 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | || ||| ||||| Sbjct 371625 CAGGACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGT----GCGTC 371680 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| ||||| || ||| | || | || ||| ||||| || | ||||| | Sbjct 371681 CATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCT 371740 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || || || ||| || | | | ||||| | |||||| || | ||| Sbjct 371741 TGTCTTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGT 371798 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || |||||||| || || || || |||||||| Sbjct 371799 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 371837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404201737586860