Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7917 118 7e-22 seq3961 111 1e-19 seq7359 104 2e-17 seq8282 95.1 8e-15 seq488 91.5 1e-13 seq1609 86.0 4e-12 seq633 86.0 4e-12 >seq7917 Length=101314 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 31252 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 31193 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| |||||| |||||||||||| Sbjct 31192 TCATCCATTCATGCGTGTCACTGATTAGATGACGA 31158 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||||||||| || ||||||| ||| | || |||||| | Sbjct 25475 AAGCCCGTTCCCTTGGCTGTGGTTTCACTGGATAGTAAGTAGAGACAGTGGGAATCTCTT 25416 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||| ||||| Sbjct 25415 TCATCCATTCATGTGCGTCACTAATTAGACGACGA 25381 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||| |||||||||||||| || || |||||| |||||||||||| Sbjct 21558 CTCTCTCTTCAAAGTTCCTTTCAACTTTCCCTTACAGTTCTTGTTGACTATCGGTCTCGT 21499 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 21498 GCCGGTATTTAGCCTTA 21482 >seq3961 Length=209076 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 |||||||||||||||||||| ||||||| |||||||| | ||| || ||||||||| Sbjct 165806 AGCCCGTTCCCTTGGCTGTGCTTTCGCTGGATAGTAGGTGGGGACAGTGGGAATCTCGTT 165865 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||||||||||||||||||||||||| || Sbjct 165866 CATCCGTTCATGCGCGTCACTAATTAGATGAGGA 165899 >seq7359 Length=110502 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | Sbjct 5525 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTTGT 5584 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 5585 GCCAGTATTTAGCCTTA 5601 >seq8282 Length=93909 Score = 95.1 bits (104), Expect = 8e-15 Identities = 73/87 (84%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 |||||||||||||||||||| || | |||||| ||||| || ||||||||| |||| Sbjct 51861 GTTCCCTTGGCTGTGGTTTCACTGGGTAGTAGGTAGGGACAGTGGGAATCTCGTTCATCC 51802 Query 25963 TTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| || |||||||||||||||| Sbjct 51801 ATTCATGTGCATCACTAATTAGATGAC 51775 >seq488 Length=645336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||| ||| |||| ||| ||||||| ||||| || |||||| | Sbjct 329290 AAGCCCGTTCCCTTGGATGTAGTTTTGCTGGATAGTAAGTAGGGACAGTGGGAATCTCTT 329349 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | || | |||| |||| |||||||||||||||||| Sbjct 329350 TCATGCATTCACGCGCATCACTAATTAGATGACGA 329384 >seq1609 Length=379010 Score = 86.0 bits (94), Expect = 4e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 19957 AAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTT 20016 |||||||||||||||||||||| |||||||||||| ||||| ||||| | ||||||| Sbjct 19148 AAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCAGTCTCATGCCAATATTT 19207 Query 20017 AGCCTTA 20023 ||||||| Sbjct 19208 AGCCTTA 19214 >seq633 Length=582679 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | ||||| || | ||| ||| || || || ||||||||||| Sbjct 204320 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAA 204379 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || || | |||| Sbjct 204380 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 204439 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| || || ||||||||||| || || || | || ||| Sbjct 204440 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACT 204499 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||| || |||||||| || ||||| || Sbjct 204500 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTT 204549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334214393514134