Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq7917 118 7e-22
seq3961 111 1e-19
seq7359 104 2e-17
seq8282 95.1 8e-15
seq488 91.5 1e-13
seq1609 86.0 4e-12
seq633 86.0 4e-12
>seq7917
Length=101314
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 31252 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 31193
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||||| |||||| ||||||||||||
Sbjct 31192 TCATCCATTCATGCGTGTCACTGATTAGATGACGA 31158
Score = 100 bits (110), Expect = 2e-16
Identities = 79/95 (83%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956
|||||||||||||||||||||||||| || ||||||| ||| | || |||||| |
Sbjct 25475 AAGCCCGTTCCCTTGGCTGTGGTTTCACTGGATAGTAAGTAGAGACAGTGGGAATCTCTT 25416
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||| ||||||||||||||| |||||
Sbjct 25415 TCATCCATTCATGTGCGTCACTAATTAGACGACGA 25381
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||||||||| |||||||||||||| || || |||||| ||||||||||||
Sbjct 21558 CTCTCTCTTCAAAGTTCCTTTCAACTTTCCCTTACAGTTCTTGTTGACTATCGGTCTCGT 21499
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 21498 GCCGGTATTTAGCCTTA 21482
>seq3961
Length=209076
Score = 111 bits (122), Expect = 1e-19
Identities = 81/94 (86%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957
|||||||||||||||||||| ||||||| |||||||| | ||| || |||||||||
Sbjct 165806 AGCCCGTTCCCTTGGCTGTGCTTTCGCTGGATAGTAGGTGGGGACAGTGGGAATCTCGTT 165865
Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| ||||||||||||||||||||||||| ||
Sbjct 165866 CATCCGTTCATGCGCGTCACTAATTAGATGAGGA 165899
>seq7359
Length=110502
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
Sbjct 5525 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTTGT 5584
Query 20007 GGTAATATTTAGCCTTA 20023
| | ||||||||||||
Sbjct 5585 GCCAGTATTTAGCCTTA 5601
>seq8282
Length=93909
Score = 95.1 bits (104), Expect = 8e-15
Identities = 73/87 (84%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962
|||||||||||||||||||| || | |||||| ||||| || ||||||||| ||||
Sbjct 51861 GTTCCCTTGGCTGTGGTTTCACTGGGTAGTAGGTAGGGACAGTGGGAATCTCGTTCATCC 51802
Query 25963 TTTCATGCGCGTCACTAATTAGATGAC 25989
|||||| || ||||||||||||||||
Sbjct 51801 ATTCATGTGCATCACTAATTAGATGAC 51775
>seq488
Length=645336
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||| ||| |||| ||| ||||||| ||||| || |||||| |
Sbjct 329290 AAGCCCGTTCCCTTGGATGTAGTTTTGCTGGATAGTAAGTAGGGACAGTGGGAATCTCTT 329349
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| || | |||| |||| ||||||||||||||||||
Sbjct 329350 TCATGCATTCACGCGCATCACTAATTAGATGACGA 329384
>seq1609
Length=379010
Score = 86.0 bits (94), Expect = 4e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 19957 AAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTT 20016
|||||||||||||||||||||| |||||||||||| ||||| ||||| | |||||||
Sbjct 19148 AAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCAGTCTCATGCCAATATTT 19207
Query 20017 AGCCTTA 20023
|||||||
Sbjct 19208 AGCCTTA 19214
>seq633
Length=582679
Score = 86.0 bits (94), Expect = 4e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | ||| | ||||| || | ||| ||| || || || |||||||||||
Sbjct 204320 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAA 204379
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | || || || ||||| || || | || || || | ||||
Sbjct 204380 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 204439
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||||||| ||| || || ||||||||||| || || || | || |||
Sbjct 204440 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACT 204499
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || || || |||| || |||||||| || ||||| ||
Sbjct 204500 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTT 204549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334214393514134
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |