Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq260 210 2e-49
seq37793 109 6e-19
seq3013 109 6e-19
seq80406 100 3e-16
>seq260
Length=805401
Score = 210 bits (232), Expect = 2e-49
Identities = 447/657 (68%), Gaps = 9/657 (1%)
Strand=Plus/Plus
Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097
|||||| | ||||| | || || ||| |||| | | ||| || ||| ||| |||
Sbjct 242816 ATTTCTTTCACTCTCTGCTCTGATGTTTTGTGTAGAAAGTGTTTGAACGTTAGGCAGGCA 242875
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157
|||| || || || || |||| ||| | |||||| || || | || ||
Sbjct 242876 CAGTCACAGTGCAAGCCCTCATCTCTGCATA--AGTTCATTGGAAAAAGTGAGGCCAGGC 242933
Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217
| |||||||| |||||||||||| |||||||| ||| || ||||||||| || || ||
Sbjct 242934 ACCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAGAAGAACCAGAAAAGAAGATTGCT 242993
Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277
||||| || ||| | | ||||||| ||| || | | || || | |||||
Sbjct 242994 TCCACTGCAGCAGAGGTTACAATACATTCTACATAGGTAGCCTCTTTGTCCCCAATCCAG 243053
Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337
| || | |||||| ||| ||||| | ||||| | |||| || || || || ||
Sbjct 243054 TGCAAGGACCAATCTGCTGCCTTCTTGAAACAAGCCATCATTTCAATGGCATTGAAGAGA 243113
Query 93338 TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397
| || | || | |||| | ||||| |||| || | | ||| |||||||||
Sbjct 243114 AATTCCCTTTCTTTGGAATTTTA-ATGTAAATATCAATAAGGCAACTATAGATTTCAGAA 243172
Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457
|| || ||||| ||||||||||| || |||||||| | ||||| || ||||| |||
Sbjct 243173 TGTGTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTG-ACT 243231
Query 93458 TCT-TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
| | || ||||| || || | ||||| ||| ||||| ||||| ||||||| ||
Sbjct 243232 TTTCTGGCTAAATCGCTTCACCAAATTTTTATTTACTATGCCATCACTCACTGCAAAGAA 243291
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT-AAGCTTATCCCAAT-CGGAT 93574
||||| | || | |||||| | |||| ||| ||| |||| | ||||| | | ||
Sbjct 243292 AGCCAGAACATAGGATGTAAAATATCTCTCCTCAGGTTTCAAGCCT-TCCCAGTGCTGAG 243350
Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634
| || || ||||||| || | ||| | | |||||| || ||||| ||||| || |||
Sbjct 243351 TG-TCCTTGTAAAGATCCACCACCTCGGCTGACCAAAAGGAAGCTTCGGCTTTCTTATAC 243409
Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691
|| | ||| || || | || |||| ||||| ||||||||| | | ||||| |||
Sbjct 243410 ATTTGCCAAATATCATAGAATGGAATAGGAAAGATGACAAAATGGTGGGGGTTTTCT 243466
>seq37793
Length=6272
Score = 109 bits (120), Expect = 6e-19
Identities = 92/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
|||||| ||||| | || || | ||||||||||||||||||||| |||||||| |||
Sbjct 4369 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCA 4428
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||| ||||||||| || || |||||||| || ||||| || |||| ||||||
Sbjct 4429 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACAACACGTTC 4481
>seq3013
Length=259453
Score = 109 bits (120), Expect = 6e-19
Identities = 92/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
|||||| ||||| | || || | ||||||||||||||||||||| |||||||| |||
Sbjct 181842 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCA 181901
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||| ||||||||| || || |||||||| || ||||| || |||| ||||||
Sbjct 181902 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACAACACGTTC 181954
>seq80406
Length=1056
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|||||| ||||| ||||| || | ||| ||||||||||||||| | || |||||
Sbjct 845 GAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 786
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472
||||||||||| || |||||||| | |||||| || | ||| |||||||| ||||| |
Sbjct 785 GCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGAACTTCTTGGCTAAATCGC 726
Query 93473 TCTAC 93477
|| ||
Sbjct 725 TCCAC 721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555611246129360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |