Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq260 210 2e-49 seq37793 109 6e-19 seq3013 109 6e-19 seq80406 100 3e-16 >seq260 Length=805401 Score = 210 bits (232), Expect = 2e-49 Identities = 447/657 (68%), Gaps = 9/657 (1%) Strand=Plus/Plus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| | ||||| | || || ||| |||| | | ||| || ||| ||| ||| Sbjct 242816 ATTTCTTTCACTCTCTGCTCTGATGTTTTGTGTAGAAAGTGTTTGAACGTTAGGCAGGCA 242875 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 |||| || || || || |||| ||| | |||||| || || | || || Sbjct 242876 CAGTCACAGTGCAAGCCCTCATCTCTGCATA--AGTTCATTGGAAAAAGTGAGGCCAGGC 242933 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | |||||||| |||||||||||| |||||||| ||| || ||||||||| || || || Sbjct 242934 ACCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAGAAGAACCAGAAAAGAAGATTGCT 242993 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 ||||| || ||| | | ||||||| ||| || | | || || | ||||| Sbjct 242994 TCCACTGCAGCAGAGGTTACAATACATTCTACATAGGTAGCCTCTTTGTCCCCAATCCAG 243053 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 | || | |||||| ||| ||||| | ||||| | |||| || || || || || Sbjct 243054 TGCAAGGACCAATCTGCTGCCTTCTTGAAACAAGCCATCATTTCAATGGCATTGAAGAGA 243113 Query 93338 TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397 | || | || | |||| | ||||| |||| || | | ||| ||||||||| Sbjct 243114 AATTCCCTTTCTTTGGAATTTTA-ATGTAAATATCAATAAGGCAACTATAGATTTCAGAA 243172 Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457 || || ||||| ||||||||||| || |||||||| | ||||| || ||||| ||| Sbjct 243173 TGTGTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTG-ACT 243231 Query 93458 TCT-TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 | | || ||||| || || | ||||| ||| ||||| ||||| ||||||| || Sbjct 243232 TTTCTGGCTAAATCGCTTCACCAAATTTTTATTTACTATGCCATCACTCACTGCAAAGAA 243291 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT-AAGCTTATCCCAAT-CGGAT 93574 ||||| | || | |||||| | |||| ||| ||| |||| | ||||| | | || Sbjct 243292 AGCCAGAACATAGGATGTAAAATATCTCTCCTCAGGTTTCAAGCCT-TCCCAGTGCTGAG 243350 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | || || ||||||| || | ||| | | |||||| || ||||| ||||| || ||| Sbjct 243351 TG-TCCTTGTAAAGATCCACCACCTCGGCTGACCAAAAGGAAGCTTCGGCTTTCTTATAC 243409 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691 || | ||| || || | || |||| ||||| ||||||||| | | ||||| ||| Sbjct 243410 ATTTGCCAAATATCATAGAATGGAATAGGAAAGATGACAAAATGGTGGGGGTTTTCT 243466 >seq37793 Length=6272 Score = 109 bits (120), Expect = 6e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| |||||||| ||| Sbjct 4369 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCA 4428 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || |||| |||||| Sbjct 4429 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACAACACGTTC 4481 >seq3013 Length=259453 Score = 109 bits (120), Expect = 6e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| |||||||| ||| Sbjct 181842 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCA 181901 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || |||| |||||| Sbjct 181902 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACAACACGTTC 181954 >seq80406 Length=1056 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| ||||| || | ||| ||||||||||||||| | || ||||| Sbjct 845 GAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 786 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || |||||||| | |||||| || | ||| |||||||| ||||| | Sbjct 785 GCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGAACTTCTTGGCTAAATCGC 726 Query 93473 TCTAC 93477 || || Sbjct 725 TCCAC 721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555611246129360