Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9005 102 7e-17 seq633 102 7e-17 seq1029 98.7 8e-16 seq1701 91.5 1e-13 >seq9005 Length=82358 Score = 102 bits (112), Expect = 7e-17 Identities = 145/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || ||||| | || || || || || || |||| ||||| || || Sbjct 12553 TAGAGATGCAGATCTTTGTGGAGACCTTGACGGGCAAGACCATCAC-CTTGAGGTCGAGC 12495 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 ||| || ||| | | || |||| ||| | |||||||||||||| || ||| | | Sbjct 12494 CCAGTGACACCATCAAGAATGTCAACGCCAAAGTCCAAGACAAGGAGGGCATCCCAGCTG 12435 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 | || || | ||| |||||||| ||||||||| | |||||| || ||| | || || | Sbjct 12434 ACCAGCAGCATCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCACACTCTTTCAGACT 12375 Query 22394 ACAACATTCAAAAAGAATCCACC 22416 ||||| | || |||| |||||| Sbjct 12374 ACAACGTCCAGGAAGAGTCCACC 12352 >seq633 Length=582679 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||||||||| || || ||| | ||||| || || |||| || |||||||| Sbjct 204552 GTCAAAATGCAAATTTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTGGAG 204493 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || || || || || || || || || Sbjct 204492 CCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCT 204433 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| |||||| | || ||| Sbjct 204432 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 204373 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| |||||| Sbjct 204372 TACAACATCCAGAAAGAGTCCACC 204349 >seq1029 Length=469353 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | ||||| || || |||| || || || || ||| Sbjct 371838 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 371779 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 371778 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCA 371719 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 371718 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 371659 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| ||||| ||||| | || || || |||| ||| | || ||| Sbjct 371658 CATTCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGTGGT 371610 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || || || ||| Sbjct 372977 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 372918 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 372917 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 372858 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || |||||| | || ||| |||||| | || || |||||| Sbjct 372857 CAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 372798 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 372797 ATCCAGAAAGAGTCCACC 372780 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | ||||| || || |||| || || || || ||| Sbjct 372066 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 372007 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 372006 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCA 371947 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || || || || |||||| | || ||| |||||| | || || ||||| Sbjct 371946 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 371887 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 371886 CATCCAGAAAGAGTCCACC 371868 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | ||||| || || |||| || || || || ||| Sbjct 372294 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 372235 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 372234 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372175 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || || || || |||||| | || ||| |||||| | || || ||||| Sbjct 372174 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372115 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 372114 CATCCAGAAAGAGTCCACC 372096 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | ||||| || || |||| || || || || ||| Sbjct 372522 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 372463 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 372462 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372403 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || || || || |||||| | || ||| |||||| | || || ||||| Sbjct 372402 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372343 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 372342 CATCCAGAAAGAGTCCACC 372324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | ||||| || || |||| || || || || ||| Sbjct 372750 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 372691 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 372690 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372631 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || || || || |||||| | || ||| |||||| | || || ||||| Sbjct 372630 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372571 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 372570 CATCCAGAAAGAGTCCACC 372552 >seq1701 Length=366390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| |||||||||||||| |||||||| || | | |||||| || ||||| |||||| Sbjct 285491 AAAATCCAAGACAAGGAGGGCATTCCACCTGACTAGCCACGTCTGATGTTTGCGGGCAAA 285550 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| | ||| | || || ||||||| || || || |||||| | || Sbjct 285551 CAGCTGGAGGATGGCTACACTCTTTCAGACTACAACAGCCAGAAGGAGTCCACCCTGCAC 285610 Query 22423 TTAGT 22427 || || Sbjct 285611 TTGGT 285615 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| |||||||||||||| |||||||| || | | |||||| || ||||| |||||| Sbjct 286185 AAAATCCAAGACAAGGAGGGCATTCCACCTGACTAGCCACGTCTGATGTTTGCGGGCAAA 286244 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| | ||| | || || ||||||| || || || |||||| | || Sbjct 286245 CAGCTGGAGGATGGCTACACTCTTTCAGACTACAACAGCCAGAAGGAGTCCACCCTGCAC 286304 Query 22423 TTAGT 22427 || || Sbjct 286305 TTGGT 286309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418809707801410