Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1029 163 5e-35 seq633 161 2e-34 seq9005 107 4e-18 seq1701 100 5e-16 seq4376 95.1 2e-14 seq11886 89.7 9e-13 seq234 86.0 1e-11 >seq1029 Length=469353 Score = 163 bits (180), Expect = 5e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | ||||||||||| |||||||| || || || || || | |||||||| Sbjct 372769 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 372828 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| ||||| ||||| || | || || ||||| || || ||||| ||||||||||| Sbjct 372829 AGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 372888 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| |||||||||||| | || || || | ||||||||| || Sbjct 372889 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 372948 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| || || ||||||||| Sbjct 372949 CCGGTCAGGGTCTTCACAAAGATCTGCATT 372978 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | ||||||||||| |||||||| || || || || || | |||||||| Sbjct 372085 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 372144 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| ||||| ||||| || | || || ||||| || || ||||| ||||||||||| Sbjct 372145 AGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 372204 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| ||| |||||||| | || || || | ||||||||| || Sbjct 372205 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 372264 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 372265 CCGGTCAGGGTCTTCACGAAGATCTGCAT 372293 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | ||||||||||| |||||||| || || || || || | |||||||| Sbjct 372313 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 372372 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| ||||| ||||| || | || || ||||| || || ||||| ||||||||||| Sbjct 372373 AGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 372432 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| ||| |||||||| | || || || | ||||||||| || Sbjct 372433 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 372492 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 372493 CCGGTCAGGGTCTTCACGAAGATCTGCAT 372521 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | ||||||||||| |||||||| || || || || || | |||||||| Sbjct 372541 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 372600 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| ||||| ||||| || | || || ||||| || || ||||| ||||||||||| Sbjct 372601 AGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 372660 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| ||| |||||||| | || || || | ||||||||| || Sbjct 372661 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 372720 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 372721 CCGGTCAGGGTCTTCACGAAGATCTGCAT 372749 Score = 159 bits (176), Expect = 6e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 68246 GCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCC 68305 ||||| |||||||| || ||||||||||| || ||||| || || || || || | || Sbjct 371622 GCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGTCC 371681 Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTT 68365 |||||| | ||| ||||| || || || | || || ||||| || || || || ||||| Sbjct 371682 ATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTT 371741 Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425 |||||| ||||| ||||||||| ||| |||||||| | || || || | |||||| Sbjct 371742 GTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGAT 371801 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || || |||||||| ||||| |||||||| Sbjct 371802 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 371837 Score = 156 bits (172), Expect = 8e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | ||||||||||| |||||||| || || || || || | |||||||| Sbjct 371857 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 371916 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| ||||| ||||| || | || || ||||| || || || || ||||||||||| Sbjct 371917 AGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCTTGG 371976 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| ||| |||||||| | || || || | ||||||||| || Sbjct 371977 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 372036 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 372037 CCGGTCAGGGTCTTCACGAAGATCTGCAT 372065 >seq633 Length=582679 Score = 161 bits (178), Expect = 2e-34 Identities = 170/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | ||||||||||| |||||||| ||||| || || || | |||||||| Sbjct 204338 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 204397 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || ||||| || || |||||||| || || || Sbjct 204398 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 204457 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || |||||||||||| | || ||||||| ||||||||| || Sbjct 204458 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 204517 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG--CTATTATA 68473 || || || ||||| ||||| || |||||| || ||||| || Sbjct 204518 CCGGTCAGAGTCTTCACGAAAATTTGCATTTTGACCTATTTTA 204560 Score = 158 bits (174), Expect = 2e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||||||| |||||||| || || || || || | |||||||| | |||||| || Sbjct 204122 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 204181 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || ||||| || || ||||| || || |||||||| || || || ||||| ||||| Sbjct 204182 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 204241 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || |||||||||||| | || ||||||| ||||||||| || || || |||||| Sbjct 204242 ACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 204301 Query 68445 TTGACGAATATCTGCAT 68461 || ||||| |||||||| Sbjct 204302 TTCACGAAGATCTGCAT 204318 >seq9005 Length=82358 Score = 107 bits (118), Expect = 4e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||| || |||||||||| |||| ||| || || || || || ||||| || Sbjct 12341 ACCAAGGACAGGGTGGACTCTTCCTGGACGTTGTAGTCTGAAAGAGTGTGGCCATCCTCC 12400 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || ||||| || || ||||| | ||| ||||| ||||||||||| Sbjct 12401 AGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAGCTGGGATGCCCTCCTTGTCTTGG 12460 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 | || || ||||| || ||||||||| | || || | |||||||||||| || Sbjct 12461 ACTTTGGCGTTGACATTCTTGATGGTGTCACTGGGCTCGACCT-CAAGGTGATGGTCTTG 12519 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| | ||||| || || |||||||| Sbjct 12520 CCCGTCAAGGTCTCCACAAAGATCTGCAT 12548 >seq1701 Length=366390 Score = 100 bits (110), Expect = 5e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || |||||||| || ||| |||| || || || || || ||||| || Sbjct 285615 ACCAAGTGCAGGGTGGACTCCTTCTGGCTGTTGTAGTCTGAAAGAGTGTAGCCATCCTCC 285556 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || | | | | ||| ||||||||||| ||||||||||| Sbjct 285555 AGCTGTTTGCCCGCAAACATCAGACGTGGCTAGTCAGGTGGAATGCCCTCCTTGTCTTGG 285496 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || |||| | |||| ||||||| |||| | | || || | || ||||| || Sbjct 285495 AT-TTTGAC-TGACATTCTCGATGCTGTCACTGGGCTTGACCTCGAGGGAAATGGTCTTG 285438 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | |||||||| || || || ||||| Sbjct 285437 CCCATCAGGGTCTTTACAAAGAT-TGCAT 285410 Score = 91.5 bits (100), Expect = 3e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || |||||||| || ||| |||| || || || || || ||||| || Sbjct 286309 ACCAAGTGCAGGGTGGACTCCTTCTGGCTGTTGTAGTCTGAAAGAGTGTAGCCATCCTCC 286250 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || | | | | ||| ||||||||||| ||||||||||| Sbjct 286249 AGCTGTTTGCCCGCAAACATCAGACGTGGCTAGTCAGGTGGAATGCCCTCCTTGTCTTGG 286190 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 || |||| | |||| ||||||| |||| Sbjct 286189 AT-TTTGAC-TGACATTCTCGATGCTGTC 286163 >seq4376 Length=192284 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 || || |||| || || ||||||||||| | || | |||||||| | ||||| Sbjct 63466 AGAGTCGACTTCTTCTGAATGTTATAATC----AAAGTACATCCATCTTCCAGTTGCTTG 63521 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || | |||||||| || || || ||||| |||||||| || || ||||| ||| Sbjct 63522 CCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 63581 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || | || || || | | ||| | || | ||||||| |||||||| ||| Sbjct 63582 TTTACATTTCCTATTGTATCCGAGGGTTCAATGTCAAGAATGATGGTCTTTCCCGTAAGG 63641 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || | ||| |||||||| Sbjct 63642 GTTTTTATGAAAATCTGCAT 63661 >seq11886 Length=47820 Score = 89.7 bits (98), Expect = 9e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || | ||||| ||| || ||||| || || ||||| || | ||| | | Sbjct 26458 ACCAAGTGCAG-GCGGACTGTTTCTGTATGTTGTAGTCTGAGAGAGTGCAGCCACCCTGG 26516 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || | | | ||| || | || ||||| ||||| ||||| ||||||||||| Sbjct 26517 AGCTGTTTGTCCACAAGTATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 26576 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || ||| | || | ||||||| | ||| | | | ||||||||| || Sbjct 26577 ATTTTGGCTTTGGCATTCTTGGTGGTGTCACTGGGTTCACCCTTTAGGGTGATGGTCTTG 26636 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | | |||||| | || |||||||| Sbjct 26637 CCCATCAAGGTCTTCATAAAGATCTGCAT 26665 >seq234 Length=833466 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 ||||||||| |||||||||||| ||||| || ||||||| || ||||||||||||| Sbjct 790246 AGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 790305 Query 84513 AGCCCCACATCGGGC 84527 |||||||| |||||| Sbjct 790306 AGCCCCACGTCGGGC 790320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919554348456080