Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1029 98.7 8e-16 seq633 98.7 8e-16 seq5167 82.4 6e-11 >seq1029 Length=469353 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || ||| |||||| || ||||| ||| Sbjct 372097 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372156 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| ||||| || || ||||| || ||||| ||||| || Sbjct 372157 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372216 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| || | ||| | || ||||||||||| || Sbjct 372217 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372276 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 372277 TTCACGAAGATCTGCAT 372293 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || ||| |||||| || ||||| ||| Sbjct 372325 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372384 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| ||||| || || ||||| || ||||| ||||| || Sbjct 372385 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372444 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| || | ||| | || ||||||||||| || Sbjct 372445 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372504 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 372505 TTCACGAAGATCTGCAT 372521 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || ||| |||||| || ||||| ||| Sbjct 372553 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372612 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| ||||| || || ||||| || ||||| ||||| || Sbjct 372613 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372672 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| || | ||| | || ||||||||||| || Sbjct 372673 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372732 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 372733 TTCACGAAGATCTGCAT 372749 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || ||| |||||| || ||||| ||| Sbjct 372781 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 372840 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| ||||| || || ||||| || ||||| ||||| || Sbjct 372841 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 372900 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| ||||| || | ||| | || ||||||||||| || Sbjct 372901 ACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372960 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 372961 TTCACAAAGATCTGCAT 372977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || ||| |||||| || ||||| ||| Sbjct 371869 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 371928 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| ||||| || || || || || ||||| ||||| || Sbjct 371929 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTG 371988 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| || | ||| | || ||||||||||| || Sbjct 371989 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 372048 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 372049 TTCACGAAGATCTGCAT 372065 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| ||||||||||| || || || || |||||| || ||||| ||| Sbjct 371641 GTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCA 371700 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || || || || || ||||| ||||| || Sbjct 371701 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTG 371760 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| || | ||| | || ||||||||||| || Sbjct 371761 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 371820 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 371821 TTCACGAAGATCTGCAT 371837 >seq633 Length=582679 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 204350 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 204409 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||||||||| || ||||| || Sbjct 204410 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 204469 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || |||||||||||||| Sbjct 204470 ACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTC 204529 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||| ||||| Sbjct 204530 TTCACGAAAATTTGCAT 204546 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | ||| || |||||| || || || || Sbjct 204122 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 204181 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||||||||| || ||||| || Sbjct 204182 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 204241 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 204242 ACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 204301 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 204302 TTCACGAAGATCTGCAT 204318 >seq5167 Length=254018 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | ||||| || || | ||| | | || || || |||||||| || || Sbjct 220487 ACCACCATGAAGTCTAAACACAAGATGAAGATTTGACTCCTTCTGAATGTTATAGTCAGA 220546 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| |||||||| |||| || | || || || ||||| Sbjct 220547 CAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAGAGATCAGTCTTTGCTGATCAGGAGG 220606 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || || ||| || Sbjct 220607 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAAC 220666 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || | | |||||||| ||||||||||| Sbjct 220667 CTCAAGAGTGATGGTCTTCCCCATAAAGGTTTTTACGAAAATCTGCAT 220714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419215218668568