Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq8862 131 1e-25 seq40139 96.9 3e-15 seq17702 96.9 3e-15 seq12448 96.9 3e-15 >seq8862 Length=84653 Score = 131 bits (144), Expect = 1e-25 Identities = 203/289 (70%), Gaps = 1/289 (0%) Strand=Plus/Plus Query 20175 GCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTC 20234 |||| || || || ||| || || ||||||||||| | || | ||| || || || Sbjct 48760 GCTCAATGTGAGTCAGGTAAATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCT 48819 Query 20235 TAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAG 20294 || || || | || || | ||| || || | || | |||||||| ||||| |||| Sbjct 48820 GCAGGCCCGTGAG-TGCGCGATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAG 48878 Query 20295 GAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAG 20354 | || |||| ||||||||||| |||||||| | |||||| ||||| |||||||||| Sbjct 48879 GCACGCCCAGGCCCATGTCTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCA 48938 Query 20355 CTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCG 20414 ||| || | || || | ||||| || || |||||||||| | | || | Sbjct 48939 CTATGTAGAGCTGGCAGAGGGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTG 48998 Query 20415 GGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT 20463 | ||||| ||| |||| ||||||||||| |||| ||||| |||| || Sbjct 48999 GATTCCAAGCATACATGATGATTCTTCTGTCGTCTGGATTGGTTTTGAT 49047 >seq40139 Length=6180 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || || || || | ||| || || | || | ||||||||| ||||| ||||| Sbjct 1008 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 949 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || || | ||||||||||| |||||||| |||||||| ||||| |||||||||| | Sbjct 948 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 889 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || || || || || | || || || || ||| |||||| Sbjct 888 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCA 846 >seq17702 Length=18075 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || || || || | ||| || || | || | ||||||||| ||||| ||||| Sbjct 13252 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 13193 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || || | ||||||||||| |||||||| |||||||| ||||| |||||||||| | Sbjct 13192 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 13133 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || || || || || | || || || || ||| |||||| Sbjct 13132 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCA 13090 >seq12448 Length=43075 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || || || || | ||| || || | || | ||||||||| ||||| ||||| Sbjct 9231 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 9290 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || || | ||||||||||| |||||||| |||||||| ||||| |||||||| | | Sbjct 9291 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 9350 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || || ||||| || | || || || || ||| |||||| Sbjct 9351 ACGTAGAATTGGCAGAGGGCATGGCACGGAGGCAGCACCATCA 9393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440382392539760