Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq8862 131 1e-25
seq40139 96.9 3e-15
seq17702 96.9 3e-15
seq12448 96.9 3e-15
>seq8862
Length=84653
Score = 131 bits (144), Expect = 1e-25
Identities = 203/289 (70%), Gaps = 1/289 (0%)
Strand=Plus/Plus
Query 20175 GCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTC 20234
|||| || || || ||| || || ||||||||||| | || | ||| || || ||
Sbjct 48760 GCTCAATGTGAGTCAGGTAAATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCT 48819
Query 20235 TAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAG 20294
|| || || | || || | ||| || || | || | |||||||| ||||| ||||
Sbjct 48820 GCAGGCCCGTGAG-TGCGCGATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAG 48878
Query 20295 GAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAG 20354
| || |||| ||||||||||| |||||||| | |||||| ||||| ||||||||||
Sbjct 48879 GCACGCCCAGGCCCATGTCTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCA 48938
Query 20355 CTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCG 20414
||| || | || || | ||||| || || |||||||||| | | || |
Sbjct 48939 CTATGTAGAGCTGGCAGAGGGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTG 48998
Query 20415 GGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT 20463
| ||||| ||| |||| ||||||||||| |||| ||||| |||| ||
Sbjct 48999 GATTCCAAGCATACATGATGATTCTTCTGTCGTCTGGATTGGTTTTGAT 49047
>seq40139
Length=6180
Score = 96.9 bits (106), Expect = 3e-15
Identities = 119/163 (73%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296
|| || || || || || | ||| || || | || | ||||||||| ||||| |||||
Sbjct 1008 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 949
Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356
|| || | ||||||||||| |||||||| |||||||| ||||| |||||||||| |
Sbjct 948 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 889
Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399
|| || || || || | || || || || ||| ||||||
Sbjct 888 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCA 846
>seq17702
Length=18075
Score = 96.9 bits (106), Expect = 3e-15
Identities = 119/163 (73%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296
|| || || || || || | ||| || || | || | ||||||||| ||||| |||||
Sbjct 13252 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 13193
Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356
|| || | ||||||||||| |||||||| |||||||| ||||| |||||||||| |
Sbjct 13192 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 13133
Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399
|| || || || || | || || || || ||| ||||||
Sbjct 13132 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCA 13090
>seq12448
Length=43075
Score = 96.9 bits (106), Expect = 3e-15
Identities = 119/163 (73%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296
|| || || || || || | ||| || || | || | ||||||||| ||||| |||||
Sbjct 9231 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 9290
Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356
|| || | ||||||||||| |||||||| |||||||| ||||| |||||||| | |
Sbjct 9291 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 9350
Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399
|| || ||||| || | || || || || ||| ||||||
Sbjct 9351 ACGTAGAATTGGCAGAGGGCATGGCACGGAGGCAGCACCATCA 9393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 440382392539760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |