Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq633 132 1e-25 seq5167 107 5e-18 seq50868 84.2 5e-11 seq19457 84.2 5e-11 >seq633 Length=582679 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 204128 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 204187 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||||||||||||||| || || ||||| || Sbjct 204188 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 204247 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || ||||| || ||||| ||||| |||||||| ||||| ||| Sbjct 204248 TCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 204307 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 204308 AAGATCTGCAT 204318 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| ||||| ||||| || || || | Sbjct 204320 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAA 204379 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || ||||| ||||| || | ||| || | ||| Sbjct 204380 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 204439 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||||||||| || || ||||| || || || | || || | || ||| Sbjct 204440 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACT 204499 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| ||||| |||||||||||||| ||||| || |||||| || Sbjct 204500 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTTG 204550 >seq5167 Length=254018 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||||| || ||||||| | || || || || |||||||| | Sbjct 220488 CCACCATGAAGTCTAAACACAAGATGAAGATTTGACTCCTTCTGAATGTTATAGTCAGAC 220547 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || ||||||| | || ||| | || Sbjct 220548 AAAGTACGTCCATCTTCCAGTTGCTTACCAGCAGAGATCAGTCTTTGCTGATCAGGAGGA 220607 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 220608 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACC 220667 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| | | || || ||||| |||||||| Sbjct 220668 TCAAGAGTGATGGTCTTCCCCATAAAGGTTTTTACGAAAATCTGCAT 220714 >seq50868 Length=3469 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | | || | ||| ||||| | || || || || ||| Sbjct 2086 TCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAG 2027 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | || ||| | || |||||||| ||||||||||| || || || || ||| Sbjct 2026 ATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTT 1967 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| | ||| | ||| || || ||||| ||| |||| | || || || | | Sbjct 1966 TCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATG 1907 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1906 AAAATCTGCAT 1896 >seq19457 Length=14611 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | | || | ||| ||||| | || || || || ||| Sbjct 1961 TCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAG 2020 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | || ||| | || |||||||| ||||||||||| || || || || ||| Sbjct 2021 ATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTT 2080 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| | ||| | ||| || || ||||| ||| |||| | || || || | | Sbjct 2081 TCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATG 2140 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2141 AAAATCTGCAT 2151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176941167600492