Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq633 132 1e-25
seq5167 107 5e-18
seq50868 84.2 5e-11
seq19457 84.2 5e-11
>seq633
Length=582679
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| |||
Sbjct 204128 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 204187
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | ||||| ||||||||||||||||| || || ||||| ||
Sbjct 204188 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 204247
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || ||||| || ||||| ||||| |||||||| ||||| |||
Sbjct 204248 TCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 204307
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 204308 AAGATCTGCAT 204318
Score = 132 bits (146), Expect = 1e-25
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||| | || || || || | ||| ||||| ||||| || || || |
Sbjct 204320 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAA 204379
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||| | || || ||||| ||||| || | ||| || | |||
Sbjct 204380 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 204439
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||||||||||||||| || || ||||| || || || | || || | || |||
Sbjct 204440 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACT 204499
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || ||||| ||||| |||||||||||||| ||||| || |||||| ||
Sbjct 204500 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTTG 204550
>seq5167
Length=254018
Score = 107 bits (118), Expect = 5e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||||| || ||||||| | || || || || |||||||| |
Sbjct 220488 CCACCATGAAGTCTAAACACAAGATGAAGATTTGACTCCTTCTGAATGTTATAGTCAGAC 220547
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| ||||| | ||| || || || ||||||| | || ||| | ||
Sbjct 220548 AAAGTACGTCCATCTTCCAGTTGCTTACCAGCAGAGATCAGTCTTTGCTGATCAGGAGGA 220607
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||||| | ||| | ||| ||
Sbjct 220608 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACC 220667
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| |||||||| | | || || ||||| ||||||||
Sbjct 220668 TCAAGAGTGATGGTCTTCCCCATAAAGGTTTTTACGAAAATCTGCAT 220714
>seq50868
Length=3469
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || |||||||| | | || | ||| ||||| | || || || || |||
Sbjct 2086 TCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAG 2027
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| | || ||| | || |||||||| ||||||||||| || || || || |||
Sbjct 2026 ATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTT 1967
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
||||| | ||| | ||| || || ||||| ||| |||| | || || || | |
Sbjct 1966 TCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATG 1907
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 1906 AAAATCTGCAT 1896
>seq19457
Length=14611
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || |||||||| | | || | ||| ||||| | || || || || |||
Sbjct 1961 TCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAG 2020
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| | || ||| | || |||||||| ||||||||||| || || || || |||
Sbjct 2021 ATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTT 2080
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
||||| | ||| | ||| || || ||||| ||| |||| | || || || | |
Sbjct 2081 TCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATG 2140
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 2141 AAAATCTGCAT 2151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1176941167600492
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |