Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq633 114 1e-20
seq2497 93.3 5e-14
seq2443 93.3 5e-14
seq1029 93.3 5e-14
seq536 93.3 5e-14
seq462 89.7 6e-13
seq38762 86.0 7e-12
seq7881 82.4 8e-11
>seq633
Length=582679
Score = 114 bits (126), Expect = 1e-20
Identities = 165/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| ||||| | ||| | ||||| ||||| ||| ||| || || || ||||||||||
Sbjct 204320 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAA 204379
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||| || | || || |||||||| || || || ||||| | ||||||||| | ||
Sbjct 204380 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 204439
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| || || || ||| ||| || || | || | | ||||| || | |||||
Sbjct 204440 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACT 204499
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214
|| | |||||||| ||||| || || ||||| || || ||||||||||| ||
Sbjct 204500 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTTGAC 204552
>seq2497
Length=292585
Score = 93.3 bits (102), Expect = 5e-14
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 82635 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 82694
Query 57066 ATACTACCGAGG-ATTGA 57082
|||||| ||||| |||||
Sbjct 82695 ATACTAACGAGGAATTGA 82712
>seq2443
Length=296648
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
|| ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||
Sbjct 127484 TTCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 127543
Query 57063 ACTATACTACCGAGGA 57078
||||||||| ||||||
Sbjct 127544 ACTATACTAACGAGGA 127559
>seq1029
Length=469353
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 381984 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 382043
Query 57067 TACTACCGAGGATT 57080
||||| ||||||||
Sbjct 382044 TACTAACGAGGATT 382057
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 391815 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 391874
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 391875 TACTAACGAGGA 391886
>seq536
Length=626470
Score = 93.3 bits (102), Expect = 5e-14
Identities = 57/61 (93%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079
|||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 414137 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGAT 414196
Query 57080 T 57080
|
Sbjct 414197 T 414197
>seq462
Length=653331
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 128645 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 128586
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 128585 TACTAACGAGGA 128574
>seq38762
Length=6230
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
||||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct 6020 TTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 6079
Query 57064 CTATACTACCGAGGA 57078
|||||||| ||||||
Sbjct 6080 CTATACTAACGAGGA 6094
>seq7881
Length=101185
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 31454 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 31395
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 31394 ATACTAACGAGGA 31382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 541993871217760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |